Re: parcellfun test issue on Mac OS 10.8, was Re: problems installing openmpi_ext

[Alexander Hansen]

On 9/9/13 5:04 AM, Francis Poulin wrote:
> Sorry, that was pretty silly.
>
> Here is the example with the package loaded.
>
> Francis
>
> octave:3> fload_example
> Reading symbols for shared libraries . done
> Reading symbols for shared libraries . done
> octave(63118,0x7fff76f3f180) malloc: *** error for object 0x1022f47e0: pointer 
> being freed was not allocated
> *** set a breakpoint in malloc_error_break to debug
>
> Program received signal SIGABRT, Aborted.
> 0x00007fff89b75212 in __pthread_kill ()
> (gdb) bt
> #0  0x00007fff89b75212 in __pthread_kill ()
> #1  0x00007fff90569b54 in pthread_kill ()
> #2  0x00007fff905addce in abort ()
> #3  0x00007fff905819b9 in free ()
> #4  0x0000000103ae8c23 in Ffload ()
> #5  0x00000001004a2506 in octave_builtin::do_multi_index_op ()
> #6  0x00000001004a1dd6 in octave_builtin::subsref ()
> #7  0x00000001004a1c91 in octave_builtin::subsref ()
> #8  0x000000010009cffe in octave_builtin::subsref ()
> #9  0x00000001005665dc in octave_value::subsref ()
> #10 0x0000000100606034 in tree_index_expression::rvalue ()
> #11 0x0000000100605080 in tree_index_expression::rvalue ()
> #12 0x0000000100607497 in tree_index_expression::rvalue1 ()
> #13 0x00000001005f1c0b in tree_simple_assignment::rvalue1 ()
> #14 0x00000001005fed90 in tree_evaluator::visit_statement ()
> #15 0x00000001005fef2d in tree_evaluator::visit_statement_list ()
> #16 0x0000000100558036 in octave_user_script::do_multi_index_op ()
> #17 0x0000000100566e26 in octave_value::do_multi_index_op ()
> #18 0x0000000100602631 in tree_identifier::rvalue ()
> #19 0x0000000100602f1b in tree_identifier::rvalue1 ()
> #20 0x00000001005fed90 in tree_evaluator::visit_statement ()
> #21 0x00000001005fef2d in tree_evaluator::visit_statement_list ()
> #22 0x000000010042826c in main_loop ()
> #23 0x00000001003cb5cb in octave_main ()
> #24 0x00007fff878327e1 in start ()

I've got similar, but slightly more verbose output (with -g, -O0, and 
using gcc-4.8 to build Octave):

4> fload_example
Reading symbols for shared libraries . done
Reading symbols for shared libraries . done
octave(54954,0x7fff7479d180) malloc: *** error for object 0x1036297e0: 
pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug

Program received signal SIGABRT, Aborted.
0x00007fff8e44c212 in __pthread_kill ()
(gdb) bt
#0  0x00007fff8e44c212 in __pthread_kill ()
#1  0x00007fff86d96b54 in pthread_kill ()
#2  0x00007fff86ddadce in abort ()
#3  0x00007fff86dae9b9 in free ()
#4  0x0000000105f6fc23 in Ffload ()
#5  0x00000001004fb472 in octave_builtin::do_multi_index_op 
(this=0x1063c4c70, nargout=1, address@hidden, lvalue_list=0x0) at 
ov-builtin.cc:131
#6  0x00000001004fb016 in octave_builtin::subsref (this=0x1063c4c70, 
address@hidden, address@hidden, nargout=1, lvalue_list=0x0) 
at ov-builtin.cc:64
#7  0x00000001004fae3e in octave_builtin::subsref (this=0x1063c4c70, 
address@hidden, address@hidden, nargout=1) at ov-builtin.cc:47
#8  0x00000001004fba49 in octave_builtin::subsref (this=0x1063c4c70, 
address@hidden, address@hidden) at ov-builtin.h:55
#9  0x00000001005c73be in octave_value::subsref (this=0x7fff5fbfcbf0, 
address@hidden, address@hidden, nargout=1) at ov.cc:1225
#10 0x00000001005c7525 in octave_value::subsref (this=0x7fff5fbfcbf0, 
address@hidden, address@hidden, nargout=1, lvalue_list=0x0) 
at ov.cc:1238
#11 0x0000000100682fa5 in tree_index_expression::rvalue 
(this=0x105d231c0, nargout=1, lvalue_list=0x0) at pt-idx.cc:413
#12 0x000000010068206c in tree_index_expression::rvalue 
(this=0x105d231c0, nargout=1) at pt-idx.cc:284
#13 0x0000000100683370 in tree_index_expression::rvalue1 
(this=0x105d231c0, nargout=1) at pt-idx.cc:425
#14 0x000000010066ce14 in tree_simple_assignment::rvalue1 
(this=0x105d73410) at pt-assign.cc:210
#15 0x000000010067b523 in tree_evaluator::visit_statement 
(this=0x100f5d560, address@hidden) at pt-eval.cc:736
#16 0x00000001006a21e1 in tree_statement::accept (this=0x105d13c10, 
address@hidden) at pt-stmt.cc:151
#17 0x000000010067b782 in tree_evaluator::visit_statement_list 
(this=0x100f5d560, address@hidden) at pt-eval.cc:772
#18 0x00000001006a2531 in tree_statement_list::accept (this=0x105d66c50, 
address@hidden) at pt-stmt.cc:215
#19 0x00000001005b8e57 in octave_user_script::do_multi_index_op 
(this=0x105d58990, nargout=0, address@hidden) at ov-usr-fcn.cc:138
#20 0x00000001005c7a84 in octave_value::do_multi_index_op 
(this=0x7fff5fbfd368, nargout=0, address@hidden) at ov.cc:1292
#21 0x000000010067f92a in tree_identifier::rvalue (this=0x106659e80, 
nargout=0) at pt-id.cc:85
#22 0x000000010067fc10 in tree_identifier::rvalue1 (this=0x106659e80, 
nargout=0) at pt-id.cc:106
#23 0x000000010067b523 in tree_evaluator::visit_statement 
(this=0x100f5d560, address@hidden) at pt-eval.cc:736
#24 0x00000001006a21e1 in tree_statement::accept (this=0x106659f20, 
address@hidden) at pt-stmt.cc:151
#25 0x000000010067b782 in tree_evaluator::visit_statement_list 
(this=0x100f5d560, address@hidden) at pt-eval.cc:772
#26 0x00000001006a2531 in tree_statement_list::accept (this=0x106659ee0, 
address@hidden) at pt-stmt.cc:215
#27 0x000000010047c13e in main_loop () at toplev.cc:595
#28 0x0000000100415dac in octave_main (argc=6, argv=0x7fff5fbfd9e0, 
embedded=0) at octave.cc:943
#29 0x0000000100000f47 in main (argc=6, argv=0x7fff5fbfd9e0) at main.c:35


--
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/