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I have solved the problem by installing
the rpm (v 1.8.9) for centos6 directly from the hdf web site on my
SL6. This works nicely
Thanks for all the help
Michael
On Thu, Jul 26, 2012 at 3:37 AM, Michael
Martins <address@hidden>
wrote:
Dear all
I have a problem linking 3.6.2 on Scientific Linux 6 (SLD6, 64
bit) with the hdf5 library. configure finds all libaries
including hdf5 and compling is now problem. However in the
linking process I am getting the following errors
./.libs/liboctinterp.so: undefined reference to `H5Eset_auto2'
./.libs/liboctinterp.so: undefined reference to `H5Gcreate2'
./.libs/liboctinterp.so: undefined reference to `H5Dopen2'
./.libs/liboctinterp.so: undefined reference to `H5Gopen2'
./.libs/liboctinterp.so: undefined reference to `H5Dcreate2'
./.libs/liboctinterp.so: undefined reference to `H5Eget_auto2'
./.libs/liboctinterp.so: undefined reference to `H5Acreate2'
This is somehow strange, because H5Eset_auto2 is not found in
any part of the octave sources. Only H5Eset_auto exists, e.g.
in
src/ls-hdf5.cc: H5Eset_auto (H5E_DEFAULT, 0, 0);
Can anybody help here?
All the best
Michael
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Michael,
H5Eset_auto is a macro which calls either H5Eset_auto1 or
H5Eset_auto2.
In your case since HAVE_HDF5_18 is defined it should call
H5Eset_auto2 which
appears to be missing from your hdf5 lib. Could you try typing
nm /usr/lib/libhdf5.so | grep set_auto
and you should see something like:
00000000000ec053 T H5E_set_auto
00000000000eabcc T H5Eset_auto1
00000000000e8e6a T H5Eset_auto2
note that H5E_set_auto is defined but this is a private function -
the macro is what
determines which is called.
--
Ed Meyer
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