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Re: Problem in 3.6.2 on SL6 with hdf5


From: Mike Miller
Subject: Re: Problem in 3.6.2 on SL6 with hdf5
Date: Thu, 26 Jul 2012 22:40:22 -0400

On Thu, Jul 26, 2012 at 12:18 PM, Michael Martins wrote:
> Am 26.07.2012 14:47, schrieb Mike Miller:
>> On Thu, Jul 26, 2012 at 6:37 AM, Michael Martins wrote:
>>> I have a problem linking 3.6.2 on Scientific Linux 6 (SLD6, 64 bit) with
>>> the
>>> hdf5 library. configure finds all libaries including hdf5 and compling is
>>> now problem.
>>
>> How did you install hdf5 on your system? EPEL repository, another
>> repo, or built from source? What is the output of "rpm -qa \*hdf5\*"?
>> Also can you list the output of "grep -i hdf5 config.status" in your
>> Octave source tree?
>
>
> Here is the output from the commands above. Everything looks ok for me.
>
> grep -i hdf5 config.status
> "_H=1 -DHAVE_PCRE_COMPILE=1 -DHAVE_ZLIB_H=1 -DHAVE_Z=1 -DHAVE_HDF5_H=1
> -DHAVE_HDF5_18=1 -DHAVE_HDF5=1 -DHAVE_GL_GL_H=1 -DHAVE_GL_GLU_H=1
> -DHAVE_OPENG"\
> S["TEXINFO_HDF5"]="@set HAVE_HDF5"
> S["HDF5_LIBS"]="-lhdf5"
> S["HDF5_LDFLAGS"]=""
> S["HDF5_CPPFLAGS"]=""
> D["HAVE_HDF5_H"]=" 1"
> D["HAVE_HDF5_18"]=" 1"
> D["HAVE_HDF5"]=" 1"

This looks the same as mine.

> rpm -qa \*hdf5\*
> hdf5-mpich2-1.8.5.patch1-7.el6.x86_64
> hdf5-1.8.7-1.el6.rf.x86_64
> hdf5-devel-1.8.7-1.el6.rf.x86_64

These are what I have installed from EPEL:
hdf5-1.8.5.patch1-7.el6.x86_64
hdf5-devel-1.8.5.patch1-7.el6.x86_64

> The libaries are taken from the EPEL repo as you did.

Not quite the same version from EPEL.

I can't say that is what your problem is, but it does work for me. Try
installing the EPEL version, maybe you have to disable one or more
other repos that are conflicting (rf = repoforge?).

-- 
mike


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