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Re: R: Error during installation of version 3.2.4


From: Riccardo Corradini
Subject: Re: R: Error during installation of version 3.2.4
Date: Fri, 26 Mar 2010 14:52:50 +0000 (GMT)

Sure,
consider the following configure example as a template
./configure --prefix="/home/corradin/octdev/" LDFLAGS="-lm -lgfortran -lpthread  -L/home/corradin/lib64/atlas/lib/ -L/home/corradin/lib64/qrupdate/    -L/home/corradin/lib64/suitesparse/lib/  -L/home/corradin/lib64/fftw/lib/  -L/home/corradin/lib64/arpack/" CFLAGS="-O2  -I /home/corradin/lib64/fftw/include/ -I /home/corradin/lib64/suitesparse/include/" CXXFLAGS="-O2 -I /home/corradin/lib64/fftw/include/  -I /home/corradin/lib64/suitesparse/include/" --with-blas="-lptcblas -lptf77blas -latlas -llapack" FFLAGS="-O2 -fomit-frame-pointer -mfpmath=387 -falign-loops=4 -m64"
I used this because I compiled myself form source the optimized libs (atlas suite-sparse arpack qrupdate etc..).
Hope this helps.
Bests
RC

--- Ven 26/3/10, address@hidden <address@hidden> ha scritto:

Da: address@hidden <address@hidden>
Oggetto: Re: R: Error during installation of version 3.2.4
A: "Riccardo Corradini" <address@hidden>
Cc: address@hidden
Data: Venerdì 26 marzo 2010, 15:03

Hi, Riccardo,

Thanks.  Do you mean that I need to install all softwares you list below?
The ARPACK, BLAS, FFTW, GLPK, HDF5, QHULL are already installed in the
machine under my local folder since I don't have a root account password.
The paths of these libraries are defined at .tcshrc.  Can you tell me how
to fill them?  Thanks.

Best reagrds,
Lianyuan


> Please Lianyuan
>  try to fill the missing dependencies
>   BLAS libraries:      
>   FFTW libraries:      
>   GLPK libraries:      
>   UMFPACK libraries:   
>   AMD libraries:       
>   CAMD libraries:      
>   COLAMD libraries:    
>   CCOLAMD libraries:   
>   CHOLMOD libraries:   
>   CXSPARSE libraries:  
>   ARPACK libraries:    
>   QRUPDATE libraries:   
>   HDF5 libraries:      
>   QHULL libraries:   
>   FLTK backend libs:   
>   CARBON libraries:    
>  and rerun configure again ( in a debian distro if you type  apt-get
> build-dep octave-3.2.... will give the list of the files and you might
> install them manually).
> Bests
> Riccardo Corradini   
>
>
> --- Ven 26/3/10, address@hidden <address@hidden> ha scritto:
>
> Da: address@hidden <address@hidden>
> Oggetto: Re: R: Error during installation of version 3.2.4
> A: address@hidden
> Cc: "Riccardo Corradini" <address@hidden>
> Data: Venerdì 26 marzo 2010, 14:09
>
> Hello,
>
> I attach the config.log here.  Thanks.
>
> Lianyuan
>
>> Hi,
>> could you please add config.log (..the main part)
>> Thanks
>>
>> --- Mer 24/3/10, address@hidden <address@hidden> ha
>> scritto:
>>
>> Da: address@hidden <address@hidden>
>> Oggetto: Error during installation of version 3.2.4
>> A: address@hidden
>> Data: Mercoledì 24 marzo 2010, 21:47
>>
>> Hello,
>>
>> I am trying to install octave version 3.2.4 to my Linux machine.  Since
>> I
>> don't have a root account password, I install the package to a
>> subdirectory under my account using --prefix to define its path.  I use
>> the following command first:
>>
>> ./configure --prefix=/my local location --enable-shared --disable-static
>>
>> Then I run "make" and the following error message comes out and the
>> installation is quit.
>>
>> ../src/liboctinterp.so: undefined reference to `std::basic_istream<char,
>> std::char_traits<char> >::ignore()'
>> ../src/liboctinterp.so: undefined reference to `__cxa_get_exception_ptr'
>> collect2: ld returned 1 exit status
>> make[2]: *** [octave] Error 1
>> make[2]: Leaving directory `/home/zheng/softwares/octave-3.2.4/src'
>> make[1]: *** [src] Error 2
>> make[1]: Leaving directory `/home/zheng/softwares/octave-3.2.4'
>> make: *** [all] Error 2
>>
>> Can someone provide me advice?  Thanks.
>>
>> Lianyuan
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>>
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