Re: can't find qhull and HDF5 libs on octave 3.0 installing (need powerful guy's help)

[Tatsuro MATSUOKA]

Hello 

I have not tried that HDF5-1.8.0.
On my cygwin binary, I have used Ver. 1.6.7.
There is no definte reason why I do not select ver. 1.8.0.
I guessed that octave itself does not change about the HDF5. 
I am afraid that HDF5-1.8.0 is too new.  

It is a mere guess.　

However, what fortran complier did use?   
 
Is the --enable-fortran required ?
I did not use this option for the hdf5 for octave.

I do not know how hdf5 is implemented to the octave so that I cannot answer any 
longer.

Let us wait a more powerful guy's help.

Regards

Tatsuro

--- guez offtsing <address@hidden> wrote:

> Thank you for your quick reply. I dive into the config.log and qhull is
> solved, while hdf5 not.
> HDF5-1.8.0 is recompiled with mpicc a second time. A lot of "undefined
> reference" appear when approach to "fortranlib". It has taken me several
> days seeking the solution. But I don't find any either from Google or
> from HDF team.
> It is a far question from octave although. I will be more appreciative
> if you can give me further advices on hdf5 compiling.
> ------------------------------
> ------------------------------
> My configure option:
> CC=/opt/mpich/ch-p4/bin/mpicc ./configure --prefix=/usr/local/hdf5
> --enable-fortran
> 
> AND the error output:
> : undefined reference to `MPI_Type_commit'
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x1d22): In function
> `H5S_obtain_datatype':
> : undefined reference to `MPI_Type_free'
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x1d92): In function
> `H5S_obtain_datatype':
> : undefined reference to `MPI_Type_struct'
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x1de2): In function
> `H5S_obtain_datatype':
> : undefined reference to `MPI_Error_string'
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x1f92): In function
> `H5S_obtain_datatype':
> : undefined reference to `MPI_Error_string'
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x2092): In function
> `H5S_obtain_datatype':
> : undefined reference to `MPI_Error_string'
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x2192): In function
> `H5S_obtain_datatype':
> : undefined reference to `MPI_Error_string'
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x2292): In function
> `H5S_obtain_datatype':
> : undefined reference to `MPI_Error_string'
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x2392): more undefined
> references to `MPI_Error_string' follow
> ../../src/.libs/libhdf5.a(H5Smpio.o)(.text+0x2522): In function
> `H5S_obtain_datatype':
> : undefined reference to `MPI_Type_free'
> ../../src/.libs/libhdf5.a(H5Dcontig.o)(.text+0x922): In function
> `H5D_contig_fill':
> : undefined reference to `MPI_Barrier'
> ../../src/.libs/libhdf5.a(H5Dcontig.o)(.text+0x972): In function
> `H5D_contig_fill':
> : undefined reference to `MPI_Error_string'
> make[2]: *** [fortranlib_test] Error 1
> make[2]: Leaving directory `/home/linux/hdf5-1.8.0/fortran/test'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/home/linux/hdf5-1.8.0/fortran'
> make: *** [all-recursive] Error 1
> ---------------------------
> ---------------------------
> 
> Regards
> 在 2008-03-22六的 06:39 +0900，Tatsuro MATSUOKA写道： 
> > Hello
> > 
> > Please also check the config.log.
> > 
> > The configure script of octave does not only check the existence but also 
> > check test code to
> be
> > complied correctly.  The detailed results do not appear on the screen.  
> > 
> > Please open  config.log by an editor and seach the corresponding part by 
> > the keywords qhull
> and hdf5.
> > 
> > Regards
> > 
> > Tatsuro
> > 
> > 
> > --- guez offtsing <address@hidden> wrote:
> > 
> > > hellow, I try to build octave3 from source on Suse Enterprise Server 9.
> > > But octave
> > > cannot find the qhull lib, so does HDF5.
> > > 
> > > linux:~/octave-3.0.0 # uname -a
> > > Linux linux 2.6.5-7.191-sn2 #1 SMP Tue Jun 28 14:58:56 UTC 2005 ia64
> > > ia64 ia64 GNU/Linux
> > > 
> > > linux:~/octave-3.0.0 #./configure CPPFLAGS=-I/usr/local/include
> > > LDFLAGS=-L/usr/local/lib |grep -E "qhull|hdf5"
> > > -------------------------
> > > checking qhull/qhull_a.h usability... no
> > > checking qhull/qhull_a.h presence... no
> > > checking for qhull/qhull_a.h... no
> > > configure: WARNING: Qhull library not found --- This will result in loss
> > > of functionality of some geometry functions.
> > > checking for H5Pcreate in -lhdf5... no
> > > configure: WARNING: HDF5 library not found.  Octave will not be able to
> > > save or load HDF5 data files.
> > > --------------------------
> > > libqhull.a is compiled and put in /usr/local/lib
> > > header files put in dir /usr/local/include/qhull
> > > 
> > > HDF5 v1.8.0 installed in /usr/local/hdf5, but I copy the .a files and 
> > > .h files to /usr/local/lib & include, too.
> > > 
> > > Why octave cannot find them? Btw, Sparse suite put in the same paths
> > > don't have any problems.
> > > 
> > > 
> > > _______________________________________________
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> > > address@hidden
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> > > 
> > 
> > 
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