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Possible store corrumption


From: Jack Hill
Subject: Possible store corrumption
Date: Mon, 20 May 2019 16:38:37 -0400 (EDT)
User-agent: Alpine 2.20 (DEB 67 2015-01-07)

Hi Guix,

I've run guix gc --verify and received the following output:

$ guix gc --verify
reading the store...
checking path existence...
path `/gnu/store/k5qxpr9wswli6lskpp433mrk0ffvxa9q-gcc-6.5.0.tar.xz.drv' 
disappeared, but it still has valid referrers!
path `/gnu/store/k5vl8jfhjasarib3ya4zpimxb1qm5hbj-expat-2.2.6-guile-builder' 
disappeared, but it still has valid referrers!
path 
`/gnu/store/k8r5c77rqzi2jg70x4sk2bf79q9gqbxn-python-minimal-wr?pper-3.7.0.drv' 
disappeared, removing from database...
path `/gnu/store?k8jx7nmx92dpr65gg2l3avajq4ngwxs7-zlib-1.2.11-guile-builder' is 
not in the store
path `/gn?/store/k681wjynl5pkmi8bdbbxxvdn2ljvq854-gnome-disk-utility-3.28.3' is 
not in the store
path `26478' is not in the store

At firt I suspected filesystem corruption, but my store is on btrfs and btrfs scrub reports no errors:

$ sudo ./btrfs scrub status /
scrub status for ffa898fe-cd24-400e-8bc7-1865643a2d45
        scrub started at Mon May 20 16:15:36 2019 and finished after 00:00:42
        total bytes scrubbed: 19.20GiB with 0 errors

guix gc fails with:

$ guix gc
finding garbage collector roots...
deleting garbage...
guix gc: error: executing SQLite query: database or disk is full

What might be causing these symptoms and how might I resolve them?

Best,
Jack



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