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[bug#70031] [PATCH v2 62/65] gnu: trinityrnaseq: Pin CMake dependency.
From: |
Greg Hogan |
Subject: |
[bug#70031] [PATCH v2 62/65] gnu: trinityrnaseq: Pin CMake dependency. |
Date: |
Tue, 22 Oct 2024 18:09:52 +0000 |
* gnu/packages/bioinformatics.scm (trinityrnaseq)
[native-inputs]: Change cmake to cmake-minimal.
[arguments]<#:phases>[install]: Remove deletion of uncreated files.
---
gnu/packages/bioinformatics.scm | 4 +---
1 file changed, 1 insertion(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d167a11ba1..c7a3517e0c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6067,8 +6067,6 @@ (define-public trinityrnaseq
(bin (string-append #$output "/bin/")))
(mkdir-p bin)
(copy-recursively "." share)
- (delete-file (string-append share
"/Chrysalis/build/CMakeFiles/CMakeOutput.log"))
- (delete-file (string-append share
"/Inchworm/build/CMakeFiles/CMakeOutput.log"))
(wrap-program (string-append share "Trinity")
`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))
@@ -6122,7 +6120,7 @@ (define-public trinityrnaseq
(list coreutils
gzip
which))
- (native-inputs (list cmake))
+ (native-inputs (list cmake-minimal))
(home-page "https://github.com/trinityrnaseq/trinityrnaseq/wiki")
(synopsis "Trinity RNA-Seq de novo transcriptome assembly")
(description "Trinity assembles transcript sequences from Illumina RNA-Seq
--
2.46.1
- [bug#70031] [PATCH v2 45/65] gnu: liblxi: Pin CMake dependency., (continued)
- [bug#70031] [PATCH v2 45/65] gnu: liblxi: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 47/65] gnu: pantheon-calculator: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 49/65] gnu: python-awkward-cpp: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 52/65] gnu: python-lief: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 56/65] gnu: python-symengine: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 60/65] gnu: syndication-domination: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 50/65] gnu: python-contourpy: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 34/65] gnu: kconfig-5: Use #:test-exclude., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 64/65] gnu: wavbreaker: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 58/65] gnu: siril: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 62/65] gnu: trinityrnaseq: Pin CMake dependency.,
Greg Hogan <=
- [bug#70031] [PATCH v2 59/65] gnu: soqt: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 65/65] gnu: xffm+: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 53/65] gnu: python-optree: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 63/65] gnu: unicorn: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 61/65] gnu: tigervnc-server: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 51/65] gnu: python-keystone-engine: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 54/65] gnu: python-pivy: Pin CMake dependency., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 32/65] gnu: dbus-cxx: Use #:test-exclude., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 33/65] gnu: hotspot: Use #:test-exclude., Greg Hogan, 2024/10/22
- [bug#70031] [PATCH v2 57/65] gnu: raider: Pin CMake dependency., Greg Hogan, 2024/10/22