bug#70336: [PATCH] gnu: Add python-libensemble.

[Vinicius Monego]

Em 15/04/2024 19:35, Nicolas Graves escreveu:
> On 2024-04-11 09:42, Vinicius Monego wrote:
>
> > * gnu/packages/maths.scm (python-libensemble): New variable.
> >
> > Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
> > ---
> >   gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++
> >   1 file changed, 53 insertions(+)
> >
> > diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
> > index 03760f3f3e..6f7e67329e 100644
> > --- a/gnu/packages/maths.scm
> > +++ b/gnu/packages/maths.scm
> > @@ -839,6 +839,59 @@ (define-public glpk-4
> >          (base32
> >           "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2"))))))
> >   
> > +(define-public python-libensemble
> > +  (package
> > +    (name "python-libensemble")
> > +    (version "1.2.2")
> > +    (source
> > +     (origin
> > +       (method url-fetch)
> > +       (uri (pypi-uri "libensemble" version))
> > +       (sha256
> > +        (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk"))))
> > +    (build-system pyproject-build-system)
> > +    (native-inputs (list ncurses
> > +                         python-mock
> > +                         python-mpi4py
> > +                         python-pytest
> > +                         python-pytest-cov
> > +                         python-pytest-timeout))
> > +    (propagated-inputs (list python-numpy
> > +                             python-psutil
> > +                             python-pydantic-2
> > +                             python-pyyaml
> > +                             python-tomli))
> > +    (arguments
> > +     (list
> > +      #:phases
> > +      #~(modify-phases %standard-phases
> > +          (add-after 'unpack 'relax-psutil
> > +            (lambda _
> > +              (substitute* "setup.py"
> > +                (("psutil>=5.9.4") "psutil>=5.9.2"))))
> > +          (replace 'check
> > +            (lambda* (#:key tests? #:allow-other-keys)
> > +              (when tests?
> > +                ;; These files require MPI and call subprocesses.
> > +                (delete-file
> > +                 "libensemble/tests/unit_tests/test_executor.py")
> > +                (delete-file
> > +                 "libensemble/tests/unit_tests/test_executor_gpus.py")
> > +                ;; Run only unit tests, regression tests require MPI.
> > +                (setenv "TERM" "xterm")
> > +                ;; A very bad way to skip another MPI test.
> > +                (substitute* "libensemble/tests/run-tests.sh"
> > +                  (("export UNIT_TEST_MPI_SUBDIR=.*")
> > +                   "export UNIT_TEST_MPI_SUBDIR=''"))
> > +                ;; Run the test script.
> > +                (invoke "bash" "libensemble/tests/run-tests.sh" "-u")))))))
> > +    (home-page "https://github.com/Libensemble/libensemble";)
> > +    (synopsis "Toolkit for dynamic ensembles of calculations")
> > +    (description "@code{libensemble} is a a complete toolkit for dynamic
> Just a little typo here (double a), otherwise LGTM.
> guix lint only complains on archival, but it's fine.
> built and rebuilt.

Pushed  with that correction and an update to 1.3.0, thanks.