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[bug#66966] [PATCH 11/13] gnu: Add r-baynorm.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#66966] [PATCH 11/13] gnu: Add r-baynorm. |
Date: |
Mon, 6 Nov 2023 12:06:47 +0100 |
* gnu/packages/bioconductor.scm (r-baynorm): New variable.
Change-Id: I83e82d3d0362874918f423ab01f038c74f3eb265
---
gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 11ed82bc58..a8fa9d7af4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22512,6 +22512,44 @@ (define-public r-bayesspace
features such as gene expression or cell type composition can be imputed.")
(license license:expat)))
+(define-public r-baynorm
+ (package
+ (name "r-baynorm")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bayNorm" version))
+ (sha256
+ (base32 "01lv4w1x43x3f9sdrqikhsr1gdvkgqzrgcd9wnjj76qsljn57ifq"))))
+ (properties `((upstream-name . "bayNorm")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-bb
+ r-biocparallel
+ r-dosnow
+ r-fitdistrplus
+ r-foreach
+ r-iterators
+ r-locfit
+ r-mass
+ r-matrix
+ r-rcpp
+ r-rcpparmadillo
+ r-rcppprogress
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/WT215/bayNorm")
+ (synopsis "Single-cell RNA sequencing data normalization")
+ (description
+ "The bayNorm package is used for normalizing single-cell RNA-seq data.
The
+main function is bayNorm, which is a wrapper function for gene specific prior
+parameter estimation and normalization. The input is a matrix of scRNA-seq
data
+with rows different genes and coloums different cells. The output is either
+point estimates from posterior (2D array) or samples from posterior (3D
array).")
+ (license license:gpl2+)))
+
(define-public r-biocthis
(package
(name "r-biocthis")
--
2.41.0
- [bug#66966] [Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx, Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 01/13] gnu: Add r-breastcancervdx., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 05/13] gnu: Add r-basics., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 02/13] gnu: Add r-bags., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 10/13] gnu: Add r-bb., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 07/13] gnu: Add r-bayesknockdown., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 11/13] gnu: Add r-baynorm.,
Mădălin Ionel Patrașcu <=
- [bug#66966] [PATCH 13/13] gnu: Add r-bcrank., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 09/13] gnu: Add r-bayesspace., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 08/13] gnu: Add r-rcppdist., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 03/13] gnu: Add r-bsgenome-ecoli-ncbi-20080805., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 06/13] gnu: Add r-basicstarrseq., Mădălin Ionel Patrașcu, 2023/11/06
- bug#66966: [PATCH 01/13] gnu: Add r-breastcancervdx., Ricardo Wurmus, 2023/11/13