[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[bug#61891]
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#61891] |
Date: |
Wed, 1 Mar 2023 08:23:41 +0100 |
Date: Thu, 23 Feb 2023 01:35:43 +0100
Subject: [PATCH 5/7] gnu: Add r-metagenomeseq.
* gnu/packages/bioconductor.scm (r-metagenomeseq): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4b5ec7db28..7de5750e09 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6644,6 +6644,39 @@ (define-public r-maser
and visualizaton of alternative splicing events generated by rMATS.")
(license license:expat)))
+(define-public r-metagenomeseq
+ (package
+ (name "r-metagenomeseq")
+ (version "1.40.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "metagenomeSeq" version))
+ (sha256
+ (base32 "01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy"))))
+ (properties `((upstream-name . "metagenomeSeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-foreach
+ r-glmnet
+ r-gplots
+ r-limma
+ r-matrix
+ r-matrixstats
+ r-rcolorbrewer
+ r-wrench))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/HCBravoLab/metagenomeSeq")
+ (synopsis "Statistical analysis for sparse high-throughput sequencing")
+ (description
+ "MetagenomeSeq is designed to determine features (be it @acronym{OTU,
Operational
+Taxanomic Unit}, species, etc.) that are differentially abundant between two or
+more groups of multiple samples. This package is designed to address the
effects
+of both normalization and under-sampling of microbial communities on disease
+association detection and the testing of feature correlations.")
+ (license license:artistic2.0)))
+
(define-public r-metaneighbor
(package
(name "r-metaneighbor")
--
2.39.1
- [bug#61891] [PATCH] gnu: Add r-biglm, r-cplm, r-som, r-chemometrics, r-metagenomeseq, r-maaslin2, r-mmuphin., Mădălin Ionel Patrașcu, 2023/03/01
- [bug#61891] [PATCH 1/7] gnu: Add r-biglm., Mădălin Ionel Patrașcu, 2023/03/01
- [bug#61891] [PATCH 2/7] gnu: Add r-cplm., Mădălin Ionel Patrașcu, 2023/03/01
- [bug#61891], Mădălin Ionel Patrașcu, 2023/03/01
- [bug#61891],
Mădălin Ionel Patrașcu <=
- [bug#61891], Mădălin Ionel Patrașcu, 2023/03/01
- [bug#61891], Mădălin Ionel Patrașcu, 2023/03/01
- [bug#61891], Mădălin Ionel Patrașcu, 2023/03/01
- [bug#61891], Mădălin Ionel Patrașcu, 2023/03/01