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[bug#50813] [PATCH v2 6/6] gnu: clipper: Disable non-deterministic test.
From: |
Felix Gruber |
Subject: |
[bug#50813] [PATCH v2 6/6] gnu: clipper: Disable non-deterministic test. |
Date: |
Sun, 10 Oct 2021 15:04:34 +0000 |
This test fails/succeeds non-deterministically.
* gnu/packages/bioinformatics.scm (clipper)[arguments]: Disable
non-deterministic test test_get_FDR_cutoff_mean.
---
gnu/packages/bioinformatics.scm | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 082e47bf5b..7dec74f0c0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -22,6 +22,7 @@
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
+;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -2363,7 +2364,13 @@ databases.")
(let ((out (assoc-ref outputs "out")))
(for-each make-file-writable
(find-files out "\\.gz$"))
- #t))))))
+ #t)))
+ (add-after 'unpack 'disable-nondeterministic-test
+ (lambda _
+ ;; This test fails/succeeds non-deterministically.
+ (substitute* "clipper/test/test_call_peak.py"
+ (("test_get_FDR_cutoff_mean") "_test_get_FDR_cutoff_mean"))
+ #t)))))
(inputs
`(("htseq" ,htseq)
("python-pybedtools" ,python-pybedtools)
--
2.30.2
- bug#50813: [PATCH] gnu: python-pandas: Update to 1.3.3., (continued)
[bug#50813] [PATCH v2 4/6] gnu: python-eliot: Update to 1.13.0., Felix Gruber, 2021/10/10
[bug#50813] [PATCH v2 6/6] gnu: clipper: Disable non-deterministic test.,
Felix Gruber <=