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[bug#48575] [PATCH 08/50] gnu: r-samr: Move to (gnu packages bioconducto
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 08/50] gnu: r-samr: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:25:40 +0200 |
* gnu/packages/cran.scm (r-samr): Move from here...
* gnu/packages/bioconductor.scm (r-samr): ...to here.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
gnu/packages/cran.scm | 30 ------------------------------
2 files changed, 31 insertions(+), 30 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 58c8336ce5..f9aa34d254 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10,6 +10,7 @@
;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu
<madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
+;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -2604,6 +2605,36 @@ built-in). The user may export/import tracks to/from
the supported browsers,
as well as query and modify the browser state, such as the current viewport.")
(license license:artistic2.0)))
+;; This is a CRAN package, but it depends on a Bioconductor package.
+(define-public r-samr
+ (package
+ (name "r-samr")
+ (version "3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "samr" version))
+ (sha256
+ (base32
+ "01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
+ (properties `((upstream-name . "samr")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-gsa" ,r-gsa)
+ ("r-impute" ,r-impute)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-openxlsx" ,r-openxlsx)
+ ("r-shiny" ,r-shiny)
+ ("r-shinyfiles" ,r-shinyfiles)))
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://statweb.stanford.edu/~tibs/SAM/")
+ (synopsis "Significance analysis of Microarrays")
+ (description
+ "This is a package for significance analysis of Microarrays for
+differential expression analysis, RNAseq data and related problems.")
+ ;; Any version of the LGPL
+ (license license:lgpl3+)))
+
(define-public r-shortread
(package
(name "r-shortread")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8709cd21fa..e5d1db7cb6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33,7 +33,6 @@
;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com>
;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
-;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -28629,35 +28628,6 @@ indicator, a quantitative variable or a survival
time.")
;; Any version of the LGPL
(license license:lgpl3+)))
-(define-public r-samr
- (package
- (name "r-samr")
- (version "3.0")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "samr" version))
- (sha256
- (base32
- "01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
- (properties `((upstream-name . "samr")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-gsa" ,r-gsa)
- ("r-impute" ,r-impute)
- ("r-matrixstats" ,r-matrixstats)
- ("r-openxlsx" ,r-openxlsx)
- ("r-shiny" ,r-shiny)
- ("r-shinyfiles" ,r-shinyfiles)))
- (native-inputs `(("gfortran" ,gfortran)))
- (home-page "https://statweb.stanford.edu/~tibs/SAM/")
- (synopsis "Significance analysis of Microarrays")
- (description
- "This is a package for significance analysis of Microarrays for
-differential expression analysis, RNAseq data and related problems.")
- ;; Any version of the LGPL
- (license license:lgpl3+)))
-
(define-public r-randomforestsrc
(package
(name "r-randomforestsrc")
--
2.30.1
- [bug#48575] [PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 01/50] gnu: r-genomicalignments: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 03/50] gnu: r-genomicfeatures: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 02/50] gnu: r-rtracklayer: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 06/50] gnu: r-msnid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 05/50] gnu: r-bsgenome: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 07/50] gnu: r-msnbase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 08/50] gnu: r-samr: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 09/50] gnu: r-impute: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 10/50] gnu: r-seqpattern: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 13/50] gnu: r-genomationdata: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 12/50] gnu: r-genomation: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 04/50] gnu: r-topgo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 14/50] gnu: r-pcamethods: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 15/50] gnu: r-mzid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 16/50] gnu: r-aroma-light: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 18/50] gnu: r-edaseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21