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[bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packag
From: |
zimoun |
Subject: |
[bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor). |
Date: |
Tue, 16 Mar 2021 14:30:53 +0100 |
Hi,
On Tue, 16 Mar 2021 at 14:20, Ricardo Wurmus <rekado@elephly.net> wrote:
> zimoun <zimon.toutoune@gmail.com> writes:
>
> > Well, thanks for the report and I confirm that adding the bioconductor
> > import in cran fixes "guix pull". But in my memories, this import
> > was adding circular dependency. Ricardo, WDYT?
>
> The point of having (gnu packages cran) and (gnu packages bioconductor)
> be separate modules is to separate independent packages.
>
> I’d like to keep it that way and not let (gnu packages cran) depend on
> (gnu packages bioconductor).
Therefore, the fix is to move the CRAN r-bisquerna and r-absfiltergsea
packages from (gnu packages cran) to (gnu packages bioconductor)
because they depend on the Bioconductor package r-biobase (and
r-limma). Right?
How do I proceed? Submit a patch moving these 2 packages and then
another patch reverting the revert?
Thanks,
simon
- [bug#47171] [PATCH 08/10] gnu: r-biostrings: Move to (gnu packages bioconductor)., (continued)
- [bug#47171] [PATCH 08/10] gnu: r-biostrings: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 10/10] gnu: r-delayedarray: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 09/10] gnu: r-rsamtools: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 05/10] gnu: r-annotationdbi: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 06/10] gnu: r-biomart: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 07/10] gnu: r-biocparallel: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- bug#47171: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/15
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Leo Famulari, 2021/03/15
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/03/16
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/16
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).,
zimoun <=
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/16
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/03/16
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/16
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/03/17
[bug#47171] [PATCH v2 1/3] gnu: r-bisquerna: Move to (gnu packages bioconductor)., zimoun, 2021/03/17