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[bug#47171] [PATCH 03/10] gnu: r-genomicranges: Move to (gnu packages bi
From: |
zimoun |
Subject: |
[bug#47171] [PATCH 03/10] gnu: r-genomicranges: Move to (gnu packages bioconductor). |
Date: |
Mon, 15 Mar 2021 19:08:57 +0100 |
* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here...
* gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 31 -------------------------------
2 files changed, 31 insertions(+), 31 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fdb2f7c7ac..ec273cae70 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1770,6 +1770,37 @@ translation between different chromosome sequence naming
conventions (e.g.,
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
+(define-public r-genomicranges
+ (package
+ (name "r-genomicranges")
+ (version "1.42.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicRanges" version))
+ (sha256
+ (base32
+ "0j4py5g6pdj35xhlaqhxxhg55j9l4mcdk3yck4dgyavv5f2dh24i"))))
+ (properties
+ `((upstream-name . "GenomicRanges")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xvector" ,r-xvector)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/GenomicRanges")
+ (synopsis "Representation and manipulation of genomic intervals")
+ (description
+ "This package provides tools to efficiently represent and manipulate
+genomic annotations and alignments is playing a central role when it comes to
+analyzing high-throughput sequencing data (a.k.a. NGS data). The
+GenomicRanges package defines general purpose containers for storing and
+manipulating genomic intervals and variables defined along a genome.")
+ (license license:artistic2.0)))
+
(define-public r-gostats
(package
(name "r-gostats")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 65db983461..4889c148e4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,37 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-genomicranges
- (package
- (name "r-genomicranges")
- (version "1.42.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "GenomicRanges" version))
- (sha256
- (base32
- "0j4py5g6pdj35xhlaqhxxhg55j9l4mcdk3yck4dgyavv5f2dh24i"))))
- (properties
- `((upstream-name . "GenomicRanges")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-iranges" ,r-iranges)
- ("r-s4vectors" ,r-s4vectors)
- ("r-xvector" ,r-xvector)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/GenomicRanges")
- (synopsis "Representation and manipulation of genomic intervals")
- (description
- "This package provides tools to efficiently represent and manipulate
-genomic annotations and alignments is playing a central role when it comes to
-analyzing high-throughput sequencing data (a.k.a. NGS data). The
-GenomicRanges package defines general purpose containers for storing and
-manipulating genomic intervals and variables defined along a genome.")
- (license license:artistic2.0)))
-
(define-public r-biobase
(package
(name "r-biobase")
--
2.30.1
- [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 01/10] gnu: r-limma: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 03/10] gnu: r-genomicranges: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#47171] [PATCH 02/10] gnu: r-xvector: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 04/10] gnu: r-biobase: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 08/10] gnu: r-biostrings: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 10/10] gnu: r-delayedarray: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 09/10] gnu: r-rsamtools: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 05/10] gnu: r-annotationdbi: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 06/10] gnu: r-biomart: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47171] [PATCH 07/10] gnu: r-biocparallel: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- bug#47171: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/15