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[bug#47156] [PATCH 05/10] gnu: r-s4vectors: Move to (gnu packages biocon
From: |
zimoun |
Subject: |
[bug#47156] [PATCH 05/10] gnu: r-s4vectors: Move to (gnu packages bioconductor). |
Date: |
Mon, 15 Mar 2021 14:01:30 +0100 |
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here...
* gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 27 ---------------------------
2 files changed, 28 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7c97e52312..ed34a9308a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus
<rekado@elephly.net>
;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
@@ -9154,6 +9155,33 @@ generated.")
routines.")
(license license:lgpl2.0+)))
+(define-public r-s4vectors
+ (package
+ (name "r-s4vectors")
+ (version "0.28.1")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "S4Vectors" version))
+ (sha256
+ (base32
+ "0fhf4lsfxrim7glazh6ng46ykzaly5ggwpg170vcz4cc24prv0rh"))))
+ (properties
+ `((upstream-name . "S4Vectors")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "https://bioconductor.org/packages/S4Vectors")
+ (synopsis "S4 implementation of vectors and lists")
+ (description
+ "The S4Vectors package defines the @code{Vector} and @code{List} virtual
+classes and a set of generic functions that extend the semantic of ordinary
+vectors and lists in R. Package developers can easily implement vector-like
+or list-like objects as concrete subclasses of @code{Vector} or @code{List}.
+In addition, a few low-level concrete subclasses of general interest (e.g.
+@code{DataFrame}, @code{Rle}, and @code{Hits}) are implemented in the
+S4Vectors package itself.")
+ (license license:artistic2.0)))
+
;; This is a CRAN package, but it depends on preprocessorcore, which is a
;; Bioconductor package.
(define-public r-wgcna
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d8d64818d2..1fcb436f0d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,33 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-s4vectors
- (package
- (name "r-s4vectors")
- (version "0.28.1")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "S4Vectors" version))
- (sha256
- (base32
- "0fhf4lsfxrim7glazh6ng46ykzaly5ggwpg170vcz4cc24prv0rh"))))
- (properties
- `((upstream-name . "S4Vectors")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)))
- (home-page "https://bioconductor.org/packages/S4Vectors")
- (synopsis "S4 implementation of vectors and lists")
- (description
- "The S4Vectors package defines the @code{Vector} and @code{List} virtual
-classes and a set of generic functions that extend the semantic of ordinary
-vectors and lists in R. Package developers can easily implement vector-like
-or list-like objects as concrete subclasses of @code{Vector} or @code{List}.
-In addition, a few low-level concrete subclasses of general interest (e.g.
-@code{DataFrame}, @code{Rle}, and @code{Hits}) are implemented in the
-S4Vectors package itself.")
- (license license:artistic2.0)))
-
(define-public r-iranges
(package
(name "r-iranges")
--
2.30.1
- [bug#47156] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 01/10] gnu: r-grohmm: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 02/10] gnu: r-biocviews: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 05/10] gnu: r-s4vectors: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#47156] [PATCH 03/10] gnu: r-biocstyle: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 06/10] gnu: r-iranges: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 04/10] gnu: r-bioccheck: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 08/10] gnu: r-genomeinfodb: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 07/10] gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 09/10] gnu: r-edger: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 10/10] gnu: r-variantannotation: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- bug#47156: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/15