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[bug#47010] [PATCH 02/10] gnu: r-deseq2: Move to (gnu packages bioconduc
From: |
zimoun |
Subject: |
[bug#47010] [PATCH 02/10] gnu: r-deseq2: Move to (gnu packages bioconductor). |
Date: |
Mon, 8 Mar 2021 18:57:55 +0100 |
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here...
* gnu/packages/bioconductor.scm (r-deseq2): ...to here.
---
gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 38 ---------------------------------
2 files changed, 38 insertions(+), 38 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e15984d0e3..f2dd4bb70b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1487,6 +1487,44 @@ structure.")
microarrays.")
(license license:artistic2.0)))
+(define-public r-deseq2
+ (package
+ (name "r-deseq2")
+ (version "1.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DESeq2" version))
+ (sha256
+ (base32
+ "0q2f9cywrcmp1p7ii8f45g4dk4hsnjflq3yqhsxgnpv9fw338qpp"))))
+ (properties `((upstream-name . "DESeq2")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-genefilter" ,r-genefilter)
+ ("r-geneplotter" ,r-geneplotter)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-iranges" ,r-iranges)
+ ("r-locfit" ,r-locfit)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/DESeq2")
+ (synopsis "Differential gene expression analysis")
+ (description
+ "This package provides functions to estimate variance-mean dependence in
+count data from high-throughput nucleotide sequencing assays and test for
+differential expression based on a model using the negative binomial
+distribution.")
+ (license license:lgpl3+)))
+
(define-public r-genefilter
(package
(name "r-genefilter")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 258c3ca409..64585127e6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7385,44 +7385,6 @@ includes software to
")
(license license:cc0))))
-(define-public r-deseq2
- (package
- (name "r-deseq2")
- (version "1.30.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "DESeq2" version))
- (sha256
- (base32
- "0q2f9cywrcmp1p7ii8f45g4dk4hsnjflq3yqhsxgnpv9fw338qpp"))))
- (properties `((upstream-name . "DESeq2")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-biocparallel" ,r-biocparallel)
- ("r-genefilter" ,r-genefilter)
- ("r-geneplotter" ,r-geneplotter)
- ("r-genomicranges" ,r-genomicranges)
- ("r-ggplot2" ,r-ggplot2)
- ("r-iranges" ,r-iranges)
- ("r-locfit" ,r-locfit)
- ("r-rcpp" ,r-rcpp)
- ("r-rcpparmadillo" ,r-rcpparmadillo)
- ("r-s4vectors" ,r-s4vectors)
- ("r-summarizedexperiment" ,r-summarizedexperiment)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/DESeq2")
- (synopsis "Differential gene expression analysis")
- (description
- "This package provides functions to estimate variance-mean dependence in
-count data from high-throughput nucleotide sequencing assays and test for
-differential expression based on a model using the negative binomial
-distribution.")
- (license license:lgpl3+)))
-
(define-public r-dexseq
(package
(name "r-dexseq")
--
2.30.1
- [bug#47010] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 01/10] gnu: r-genefilter: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 05/10] gnu: r-rbgl: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 06/10] gnu: r-gseabase: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 09/10] gnu: r-shortread: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 04/10] gnu: r-annotationforge: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 03/10] gnu: r-dexseq: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 02/10] gnu: r-deseq2: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#47010] [PATCH 07/10] gnu: r-category: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 08/10] gnu: r-gostats: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- [bug#47010] [PATCH 10/10] gnu: r-systempiper: Move to (gnu packages bioconductor)., zimoun, 2021/03/08
- bug#47010: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/12