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[PATCH 19/22] gnu: Add exonerate.
From: |
Ben Woodcroft |
Subject: |
[PATCH 19/22] gnu: Add exonerate. |
Date: |
Wed, 27 Jul 2016 22:54:20 +1000 |
* gnu/packages/bioinformatics.scm (exonerate): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ea2240..14ac57f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -51,6 +51,7 @@
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
+ #:use-module (gnu packages glib)
#:use-module (gnu packages groff)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
@@ -1917,6 +1918,34 @@ in structured XML format. This can eliminate the need
for writing custom
software to answer ad hoc questions.")
(license license:public-domain)))
+(define-public exonerate
+ (package
+ (name "exonerate")
+ (version "2.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append
+ "http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/"
+ "exonerate-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1zz5dxhpkrv5k892kcjp3wqsw5ml54qg88lmi2gk5yl82c5p58hf"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (inputs
+ `(("glib" ,glib)))
+ (home-page
+ "https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate")
+ (synopsis "Generic tool for biological sequence alignment")
+ (description
+ "Exonerate is a generic tool for pairwise sequence comparison. It allows
+the alignment of sequences using a many alignment models, either exhaustive
+dynamic programming or a variety of heuristics.")
+ (license license:gpl3)))
+
(define-public express
(package
(name "express")
--
2.9.1
- [PATCH 10/22] gnu: Add perl-array-utils., (continued)
- [PATCH 10/22] gnu: Add perl-array-utils., Ben Woodcroft, 2016/07/27
- [PATCH 11/22] gnu: Add perl-test-files., Ben Woodcroft, 2016/07/27
- [PATCH 12/22] gnu: Add perl-env-path., Ben Woodcroft, 2016/07/27
- [PATCH 13/22] gnu: Add mcl., Ben Woodcroft, 2016/07/27
- [PATCH 14/22] gnu: Add bpp-core., Ben Woodcroft, 2016/07/27
- [PATCH 15/22] gnu: Add bpp-seq., Ben Woodcroft, 2016/07/27
- [PATCH 16/22] gnu: Add bpp-phyl., Ben Woodcroft, 2016/07/27
- [PATCH 17/22] gnu: Add bpp-popgen., Ben Woodcroft, 2016/07/27
- [PATCH 18/22] gnu: Add bppsuite., Ben Woodcroft, 2016/07/27
- [PATCH 19/22] gnu: Add exonerate.,
Ben Woodcroft <=
- [PATCH 20/22] gnu: Add prank., Ben Woodcroft, 2016/07/27
- [PATCH 21/22] gnu: Add raxml., Ben Woodcroft, 2016/07/27
- [PATCH 22/22] gnu: Add roary., Ben Woodcroft, 2016/07/27
- Re: [PATCH 01/22] gnu: parallel: Use full paths for executables., Leo Famulari, 2016/07/28
- Re: PATCH [0/22]: Add roary., Ludovic Courtès, 2016/07/31