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Re: [PATCH] gnu: Add r-limma.
From: |
Ricardo Wurmus |
Subject: |
Re: [PATCH] gnu: Add r-limma. |
Date: |
Tue, 3 May 2016 11:31:06 +0200 |
Roel Janssen <address@hidden> writes:
> Dear Guix,
>
> I have two R packages I would like to add. The other package 'r-edger'
> depends on this one. This is the first time I'm attempting an inline
> patch, so I hope this works out well.
Thanks for the patch. It worked!
>>From 565fa10f9896e1143419b2a2c6496b91a135a930 Mon Sep 17 00:00:00 2001
> From: Roel Janssen <address@hidden>
> Date: Tue, 3 May 2016 09:30:14 +0200
> Subject: [PATCH] gnu: Add r-limma.
>
> * gnu/packages/bioinformatics.scm (r-limma): New variable.
> ---
> gnu/packages/bioinformatics.scm | 18 ++++++++++++++++++
> 1 file changed, 18 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 079fd46..3dfb55e 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -4171,6 +4171,24 @@ names in their natural, rather than lexicographic,
> order.")
> coding changes and predict coding outcomes.")
> (license license:artistic2.0)))
>
> +(define-public r-limma
> + (package
> + (name "r-limma")
> + (version "3.26.9")
> + (source (origin
> + (method url-fetch)
> + (uri (bioconductor-uri "limma" version))
> + (sha256
> + (base32
> + "0mj72zsj1awjf3i2y9x8m7ih4sx9qrs1rlrck9l7mn5afxqsfrsm"))))
> + (properties `((upstream-name . "limma")))
I don’t think we need this as the name is all lowercase, as expected.
We only set the “upstream-name” property when the name contains special
characters or uppercase letters.
> + (build-system r-build-system)
> + (home-page "http://bioinf.wehi.edu.au/limma")
> + (synopsis "This package provides linear models for microarray data")
> + (description "This package provides linear models and differential
> +expression for microarray data analysis.")
The description could be improved. There’s a better description on the
home page. You might be able to adapt it.
> + (license license:gpl2+)))
> +
> (define-public r-xvector
> (package
> (name "r-xvector")
~~ Ricardo