03/09: gnu: r-flowviz: Disable tests.

[guix-commits]

rekado pushed a commit to branch r-team
in repository guix.

commit 87728fa12ff76f91bc8ec3232cfa6a017640f609
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Nov 27 17:15:07 2024 +0100

    gnu: r-flowviz: Disable tests.
    
    * gnu/packages/bioconductor.scm (r-flowviz)[arguments]: Disable tests.
    [properties]: Tell updater to ignore r-flowstats.
    [native-inputs]: Add r-ncdfflow.
    
    Change-Id: Ic6123c745dbfc25c026646e92a230a62db483306
---
 gnu/packages/bioconductor.scm | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 91b8964de6..1c1d47d71f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -20187,8 +20187,14 @@ statistics to the plot.")
        (sha256
         (base32
          "1ymqx5zasrr5snmg71p58hk526yxpvs4d78df2hgxfah5w6vxd6w"))))
-    (properties `((upstream-name . "flowViz")))
+    (properties
+     `((upstream-name . "flowViz")
+       ;; Avoid dependency cycle.
+       (updater-ignored-native-inputs . ("r-flowstats"))))
     (build-system r-build-system)
+    ;; There is only one test file and it depends on r-flowstats, which
+    ;; depends on this package.
+    (arguments (list #:tests? #false))
     (propagated-inputs
      (list r-biobase
            r-flowcore
@@ -20200,7 +20206,7 @@ statistics to the plot.")
            r-mass
            r-rcolorbrewer))
     (native-inputs
-     (list r-knitr r-testthat))
+     (list r-knitr r-ncdfflow r-testthat))
     (home-page "https://bioconductor.org/packages/flowViz/";)
     (synopsis "Visualization for flow cytometry")
     (description