47/56: gnu: r-metagenomeseq: Add test inputs.

[guix-commits]

rekado pushed a commit to branch r-team
in repository guix.

commit 69446a21c942bb718d33c3340dd005a8e917b44b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Nov 26 12:03:22 2024 +0100

    gnu: r-metagenomeseq: Add test inputs.
    
    * gnu/packages/bioconductor.scm (r-metagenomeseq)[native-inputs]: Add
    r-testthat.
    [arguments]: Add phase 'delete-bad-tests.
    
    Change-Id: I702d02695fe0b078bd2b97b958a0bbde73d0c2d5
---
 gnu/packages/bioconductor.scm | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b1f586ae11..1250edd8c4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9910,6 +9910,14 @@ mixes commonly used in MS experiments.")
         (base32 "0bjbiwbgs0lv0j6gjv5rhqhmqk0p7f80lfig4n24i4bqwkd2j26k"))))
     (properties `((upstream-name . "metagenomeSeq")))
     (build-system r-build-system)
+    (arguments
+     (list
+      #:phases
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'delete-bad-tests
+           (lambda _
+             ;; Two tests fail with accuracy problems.
+             (delete-file "tests/testthat/test-fitZig.R"))))))
     (propagated-inputs
      (list r-biobase
            r-foreach
@@ -9920,7 +9928,7 @@ mixes commonly used in MS experiments.")
            r-matrixstats
            r-rcolorbrewer
            r-wrench))
-    (native-inputs (list r-knitr))
+    (native-inputs (list r-knitr r-testthat))
     (home-page "https://github.com/HCBravoLab/metagenomeSeq";)
     (synopsis "Statistical analysis for sparse high-throughput sequencing")
     (description