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12/23: gnu: r-kegggraph: Add test inputs.
From: |
guix-commits |
Subject: |
12/23: gnu: r-kegggraph: Add test inputs. |
Date: |
Mon, 25 Nov 2024 10:56:59 -0500 (EST) |
rekado pushed a commit to branch r-team
in repository guix.
commit e3377f5bf2ac630391ba77d6668c0c7153757c77
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Nov 25 14:13:27 2024 +0100
gnu: r-kegggraph: Add test inputs.
* gnu/packages/bioconductor.scm (r-kegggraph)[arguments]: Disable vignettes.
[native-inputs]: Add r-hgu133plus2-db and r-rbgl.
Change-Id: I7958c35cb0e507b209578c0a5d0a093fc9759e0c
---
gnu/packages/bioconductor.scm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6ea5387f40..818d2c04b5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -23971,9 +23971,11 @@ annotation, and functions for GWAS data cleaning and
analysis.")
(base32 "08xk85p76dbywsxw5w0ckw31m0raar5frkz14qwz4x88ilwhrw25"))))
(properties `((upstream-name . "KEGGgraph")))
(build-system r-build-system)
+ ;; Vignettes require connection to the internet.
+ (arguments (list #:test-types '(list "tests")))
(propagated-inputs
(list r-graph r-rcurl r-rgraphviz r-xml))
- (native-inputs (list r-testthat))
+ (native-inputs (list r-hgu133plus2-db r-rbgl r-testthat))
(home-page "https://bioconductor.org/packages/KEGGgraph")
(synopsis "Graph approach to Kegg Pathway database in R and Bioconductor")
(description
- branch r-team updated (cb5b7e5ddc -> a808aefd78), guix-commits, 2024/11/25
- 01/23: gnu: r-tarchetypes: Disable tests., guix-commits, 2024/11/25
- 03/23: gnu: r-affy: Disable tests., guix-commits, 2024/11/25
- 02/23: gnu: r-seqarray: Add test inputs., guix-commits, 2024/11/25
- 04/23: gnu: r-gwastools: Disable tests., guix-commits, 2024/11/25
- 06/23: gnu: r-assertive-properties: Add test inputs., guix-commits, 2024/11/25
- 07/23: gnu: r-assertive-numbers: Add test input., guix-commits, 2024/11/25
- 11/23: gnu: r-assertive-reflection: Add test input., guix-commits, 2024/11/25
- 09/23: gnu: r-assertive-matrices: Add test input., guix-commits, 2024/11/25
- 10/23: gnu: r-assertive-models: Add test input., guix-commits, 2024/11/25
- 12/23: gnu: r-kegggraph: Add test inputs.,
guix-commits <=
- 13/23: gnu: r-zoon: Disable tests., guix-commits, 2024/11/25
- 15/23: gnu: r-singlet: Add test inputs., guix-commits, 2024/11/25
- 05/23: gnu: r-snprelate: Add test inputs., guix-commits, 2024/11/25
- 08/23: gnu: r-assertive-sets: Add test input., guix-commits, 2024/11/25
- 17/23: gnu: Add r-fmesher., guix-commits, 2024/11/25
- 14/23: gnu: r-rapportools: Disable tests., guix-commits, 2024/11/25
- 18/23: gnu: Add r-ccfindr., guix-commits, 2024/11/25
- 19/23: gnu: r-zonator: Add test inputs., guix-commits, 2024/11/25
- 20/23: gnu: r-mutationalpatterns: Add missing inputs., guix-commits, 2024/11/25
- 21/23: gnu: r-chipcomp: Add missing inputs., guix-commits, 2024/11/25