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12/23: gnu: r-kegggraph: Add test inputs.


From: guix-commits
Subject: 12/23: gnu: r-kegggraph: Add test inputs.
Date: Mon, 25 Nov 2024 10:56:59 -0500 (EST)

rekado pushed a commit to branch r-team
in repository guix.

commit e3377f5bf2ac630391ba77d6668c0c7153757c77
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Nov 25 14:13:27 2024 +0100

    gnu: r-kegggraph: Add test inputs.
    
    * gnu/packages/bioconductor.scm (r-kegggraph)[arguments]: Disable vignettes.
    [native-inputs]: Add r-hgu133plus2-db and r-rbgl.
    
    Change-Id: I7958c35cb0e507b209578c0a5d0a093fc9759e0c
---
 gnu/packages/bioconductor.scm | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6ea5387f40..818d2c04b5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -23971,9 +23971,11 @@ annotation, and functions for GWAS data cleaning and 
analysis.")
         (base32 "08xk85p76dbywsxw5w0ckw31m0raar5frkz14qwz4x88ilwhrw25"))))
     (properties `((upstream-name . "KEGGgraph")))
     (build-system r-build-system)
+    ;; Vignettes require connection to the internet.
+    (arguments (list #:test-types '(list "tests")))
     (propagated-inputs
      (list r-graph r-rcurl r-rgraphviz r-xml))
-    (native-inputs (list r-testthat))
+    (native-inputs (list r-hgu133plus2-db r-rbgl r-testthat))
     (home-page "https://bioconductor.org/packages/KEGGgraph";)
     (synopsis "Graph approach to Kegg Pathway database in R and Bioconductor")
     (description



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