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branch core-updates updated (d859ab9375 -> 02f07bcd3b)


From: guix-commits
Subject: branch core-updates updated (d859ab9375 -> 02f07bcd3b)
Date: Sun, 26 May 2024 10:31:48 -0400 (EDT)

jpoiret pushed a change to branch core-updates
in repository guix.

    from d859ab9375 Revert "gnu: autotrace: Fix pkg-config file."
     new 6973982019 gnu: glibc/fixed: Remove variable.
     new 2852150b21 gnu: %default-locale-libcs: Add glibc-2.35 and generalize 
for Hurd.
     new 43d6d63c7f gnu: glibc-2.35: Use CVE-2023-4911 again.
     new f8f49e965e gnu: glibc-2.35: Disable C++ compiler for build.
     new a8c84b52a0 gnu: make-glibc-locales: Modernize.
     new 7f30aeb9f8 gnu: Add glibc-locales-2.35.
     add e66b8d0534 gnu: cuirass: Update to 1.2.0-3.42b55a1.
     add 35ae95061e system: Do not delete all nss-certs packages when they are 
the same object.
     add 5a624adfd7 teams: Add Maxim to documentation team.
     add b803b9aad1 gnu: Add tran.
     add 6d36befee8 gnu: Add go-github-com-warpfork-go-wish.
     add cc97cec5dd gnu: Add go-github-com-pion-randutil.
     add 09535959a9 gnu: Add go-github-com-pion-rtp.
     add 26b324d082 gnu: Add go-github-com-pion-logging.
     add 08f391af78 gnu: Add go-github-com-pion-transport.
     add 79bc5c20b2 gnu: Add go-github-com-pion-transport-v2.
     add 78e7868bb5 gnu: Add go-github-com-pion-transport-v3.
     add f2b28d8334 gnu: Add go-github-com-pion-mdns.
     add 6f0efe0288 gnu: Add go-github-com-pion-dtls.
     add c4ee108937 gnu: Add go-github-com-pion-dtls-v2.
     add 6ae27a1838 gnu: Add go-github-com-pion-stun.
     add 1f8e29256e gnu: Add go-github-com-pion-stun-v2.
     add f1c8df4ee9 gnu: Add go-github-com-elgris-jsondiff.
     add 508472d354 gnu: kubo: Unbundle go-github-com-elgris-jsondiff.
     add 0846eaecd4 gnu: xdot: Bugfix: Add the directory containing "dot" to 
the PATH.
     add e4ee595999 gnu: python-tinydb: Upgrade to 4.8.0.
     add 6faf82c7e9 gnu: 0xffff: Update to 0.10.
     add cf37df2278 gnu: tdlib: Update to 1.8.29.
     add e9b25a6c6c gnu: emacs-telega: Update to 0.8.290.
     add a47cab5d28 gnu: ruby-ruby-memcheck: Use non-interactive valgrind.
     add 14176a289b gnu: LLVM, Clang, libomp, lld: Update to 18.1.5.
     add ad520acdad gnu: atop: Update to 2.10.0.
     add 6c2d329556 gnu: nar-herder: Update to 0-33.bbf5119.
     add dd03be186a gnu: guix-build-coordinator: Update to 0-105.1ecad69.
     add 58614c9b4b gnu: samtools: Fix build on i686-linux.
     add 85fa9458a1 gnu: python-numba: Adjust test suite on several 
architectures.
     add 8c21c9ad23 gnu: python-peachpy: Limit to x86_64-linux.
     add 0685042c46 import: Add binary npm importer.
     add 9c3a8a380b doc: cookbook: Fix overlong lines.
     add c8c1ed08c1 gnu: linux-libre-6.8: Update to 6.8.10.
     add cd3e6d92d3 gnu: linux-libre 6.6: Update to 6.6.31.
     add d0a14dfad1 gnu: linux-libre 6.1: Update to 6.1.91.
     add 7da663ff16 gnu: linux-libre 5.15: Update to 5.15.159.
     add 49aa670554 gnu: linux-libre 5.10: Update to 5.10.217.
     add a1bb0afc7b gnu: linux-libre 5.4: Update to 5.4.276.
     add 630cbcbae1 gnu: linux-libre 4.19: Update to 4.19.314.
     add 7881d60851 gnu: emacs-gptel: Update to 0.8.6.
     add 246a118767 gnu: inklingreader: Build with librsvg-for-system.
     add 1b98688c29 gnu: lablgtk: Build with librsvg-for-system.
     add a1f1148dbd gnu: enblend-enfuse: Build with librsvg-for-system.
     add 24db97c10d gnu: labwc: Build with librsvg-for-system.
     add e50fc5380e gnu: abseil-cpp-20200923.3: Fix test suite on some 
architectures.
     add 81d08d7970 gnu: abseil-cpp: Fix build on i686-linux.
     add c634135ef9 gnu: perl-dbix-class: Update to 0.082843.
     add b3d8d5511f gnu: julia-fixedpointnumbers: Update to 0.8.5.
     add af2791d4e1 gnu: cl-for: Update to 1.2.0-1.a397829.
     add e9f9740d42 gnu: Add cl-cf.
     add 3fd9f25bb3 gnu: Add cl-in-memory-streams.
     add 5c5e2a7491 gnu: crun: Update to 1.15.
     add abc62671e0 gnu: podman: Drop obsolete comment.
     add 0d6815ae82 gnu: podman: Update to 5.0.2.
     add d9e5c0f8d3 gnu: conmon: Update to 2.1.11.
     add 5bea6482e6 gnu: passt: Update to 2024_03_20.71dd405.
     add 2bfdc768d7 gnu: Add catatonit.
     add e89bfb919e gnu: Add podman-compose.
     add 19c1c385c7 gnu: gvisor-tap-vsock: Remove references to go.
     add 4f02e0b7f8 gnu: buildah: Update to 1.35.3.
     add b55997d9df gnu: podman: Revamp the package.
     add 413ef75f89 gnu: buildah: Switch to gnu-build-system.
     add 04aa2aab70 gnu: linux-libre-6.8: Add riscv config.
     add e5078ff321 image: Raise error when use both grub-efi* bootloader and 
not gpt image.
     add eaa99648ff gnu: shepherd-0.10: When target riscv64, use 
guile-fibers-1.1.
     add 800b33786c gnu: Add opensbi-for-visionfive2.
     add 08474ff6ec gnu: Add u-boot-starfive-visionfive2.
     add c7aec90a91 bootloader: Add u-boot-starfive-visionfive2-bootloader.
     add 327a1f0779 system: images: Add visionfive2 module.
     add 9523b968d5 gnu: fnott: Update to 1.6.0.
     add b1db320473 gnu: yambar-wayland: Update to 1.11.0.
     add 1fa1325c0b gnu: LLVM, Clang, libomp, lld: Update to 18.1.6.
     add 036c0b5843 gnu: btop: Update to 1.3.2.
     add bf6602beaf gnu: wlsunset: Install man pages.
     add f1a573067c gnu: wlsunset: Update to 0.4.0.
     add d7a65f1e91 gnu: emacs-denote: Update to 2.3.0.
     add 6bcecb6898 import/elpa: Add proper file-name to origin.
     add 750148ce1e gnu: gcc-13: Update to 13.3.0.
     add 284a8cd681 gnu: axel: Update to 2.17.14.
     add 50bbe668d4 gnu: schmutz: update to commit f8043e.
     add 5000c417c0 gnu: python-pymysql: Update to 1.1.1 [fixes CVE-2024-36039].
     add b06a460bf5 gnu: python-pymysql: Propagate python-cryptography.
     add b462cff5ee gnu: python-pandera: Update to 0.18.0, fix build.
     add 4955589f2f doc: Make changes to the handling of branches.
     add d658f8c9af gnu: Add r-chameleon.
     add 9f9127e80a gnu: ensembl-vep: Update to 112.
     add 675d31a5df gnu: Add esbuild-node.
     add b1b981a477 gnu: Add r-waiter.
     add a4d8a93abc gnu: Add r-shinydashboardplus.
     add c46f46f2f3 gnu: Add r-slanter.
     add 3597c73658 gnu: Add r-tglkmeans.
     add ee86a504e9 gnu: augeas: Update to 1.14.1.
     add 8f0b5e35f3 gnu: Add python-augeas.
     add 0cc9d66b45 gnu: Add go-go-uber-org-mock.
     add 697252da1c gnu: go-github-com-go-task-slim-sprig: Move to golang-xyz.
     add 33a2644963 gnu: go-github-com-go-task-slim-sprig: Enable tests.
     add 265452e122 gnu: Add go-github-com-go-task-slim-sprig-v3.
     add 003a65cafa gnu: go-github-com-onsi-ginkgo-v2: Update to 2.18.0.
     add fb8ddfc57f gnu: go-github-com-onsi-gomega: Update to 1.33.1.
     add 8c6fb68203 gnu: Add go-ginkgo.
     add a3318b4ede gnu: go-github-com-syndtr-goleveldb-leveldb: Use go-1.21.
     add 3ebb39eb42 gnu: go-github-com-syndtr-goleveldb-leveldb: Move to 
golang-xyz.
     add 120ad702e0 gnu: go-github-com-quic-go-quic-go: Enable tests.
     add 2234a1f282 gnu: Remove go-github-com-lucas-clemente-quic-go.
     add c3fe248e69 gnu: kubo: Unbundle go-github-com-quic-go-quic-go.
     add d4118a34e3 gnu: Add pkcs11-helper.
     add 940fbce604 gnu: passt: Update to 2024_05_10.7288448.
     add 90514e3c1d gnu: bvi: Update to 1.4.2.
     add 4fbce61aa9 gnu: skopeo: Update to 1.15.1 [security fixes].
     add 792155da11 gnu: buildah: Update to 1.35.4 [security fixes].
     add 2d49d727b3 gnu: podman: Update to 5.0.3 [security fixes].
     add 63ee61a56d gnu: dcmtk: Update to 3.6.8. [security-fixes]
     add 28b336d02e gnu: wireshark: Update to 4.2.5 [security fixes].
     add aeba4849b4 gnu: abseil-cpp: Fix linking on riscv64-linux.
     add a67218efee gnu: kubo: Remove propagated package.
     add 016fd7720d gnu: Add specification-ipld.
     add 02427ea997 gnu: gssdp: Enable building on more architectures.
     add 114333956e gnu: gnome-meta-core-utilities: Add eog unconditionally.
     add 055d70f5d8 gnu: gnome-text-editor: Build with cmake-minimal.
     add 3694221290 gnu: brltty: Build with java only on some architectures.
     add 701aee876e gnu: gtk-vnc: Build without node.
     add c9730b7029 gnu: glade3: Build with gjs on more architectures.
     add 1bfffc007a gnu: gtk-vnc: Build with gjs on more architectures.
     add 4ab8657b23 gnu: libbraille: Fix build on some architectures.
     add 0ad3cc75ae gnu: shared-mime-info: Fix cross-compiling.
     add 7e762ab09e gnu: roxterm: Fix lint errors.
     add 9901416233 gnu: ctl: Update to 1.5.3.
     add c5e63e19ac gnu: gssdp-1.4: Fix building.
     add 2ac3d61ca3 gnu: cl-cf: Update to 1.0-2.fbc025b.
     add 199e8f9581 gnu: cl-collectors: Update to 1.0-2.4c5e70c.
     add 1fa8997f6f gnu: cl-stmx: Update to 2.0.5-3.95f7dea.
     add 8ca6e63b00 gnu: cl-access: Update to 1.6.0-1.a4f87fc.
     add 9756d9d634 gnu: cl-nodgui: Update to 0.6.2.0-1.9d0c973.
     add cbac0b1db0 environment: Fix type error with ‘-C’ when ‘getpwuid’ fails.
     add a237f0d436 services: Add restic-backup service.
     add 003c89a85c gnu: docker: Provide escape hatch in 
oci-container-configuration.
     add e68c1af4f4 gnu: docker: Allow setting host environment variables in 
oci-container-configuration.
     add 68adfaea25 gnu: docker: Allow setting Shepherd dependencies in 
oci-container-configuration.
     add c07731a777 gnu: docker: Allow passing tarballs for images in 
oci-container-configuration.
     add be868f69aa gnu: Add tests for oci-container-service-type.
     add 0efa1daad3 doc: Document ‘assume-valid-file-name’ in ‘local-file’.
     add 73b3f941d7 maint: Suggest ‘guix git authenticate’ for initial 
authentication.
     add 5a7cb59648 deduplication: Detect holes and create sparse files.
     add cca25a6769 services: shepherd: Failure to load a service does not 
prevent booting.
     add 83fc6c7f72 gnu: lvm2: Remove systemd rule.
     add 51966d1bae gnu: lisp-xyz : Sort packages.
     add 888d526822 gnu: cl-misc-extensions: Update to 4.0.3.
     add 94c8cec999 gnu: vcmi: Update to 1.5.1.
     add 77771036f0 configure.ac: Set default value for the 'prefix' variable.
     add a4a45669c7 gnu: python-scikit-image: Disable 
test_ellipse_parameter_stability.
     add 13d5e6f84a gnu: xpra: Update to 6.0.1.
     add e51d98d8e9 gnu: fasd: Update to 1.0.2.
     add dc8fb56724 gnu: Add luarocks.
     new 02f07bcd3b Merge remote-tracking branch 'origin/master' into 
core-updates

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                                        |    34 +-
 configure.ac                                       |     8 +-
 doc/contributing.texi                              |   113 +-
 doc/guix-cookbook.texi                             |    69 +-
 doc/guix.texi                                      |   273 +-
 etc/git/post-merge                                 |     3 +
 etc/git/pre-push                                   |     4 +-
 etc/teams.scm                                      |     2 +-
 gnu/bootloader/u-boot.scm                          |    29 +
 gnu/local.mk                                       |     8 +-
 gnu/packages/accessibility.scm                     |    56 +-
 gnu/packages/admin.scm                             |    40 +-
 gnu/packages/augeas.scm                            |    51 +-
 gnu/packages/aux-files/linux-libre/6.8-riscv.conf  |  7681 ++++
 gnu/packages/base.scm                              |   111 +-
 gnu/packages/bioinformatics.scm                    |    24 +-
 gnu/packages/bootloaders.scm                       |    25 +
 gnu/packages/ci.scm                                |    13 +-
 gnu/packages/containers.scm                        |   321 +-
 gnu/packages/cpp.scm                               |    17 +-
 gnu/packages/cran.scm                              |   335 +
 gnu/packages/databases.scm                         |    41 +-
 gnu/packages/emacs-xyz.scm                         |    18 +-
 gnu/packages/firmware.scm                          |    14 +
 gnu/packages/flashing-tools.scm                    |    22 +-
 gnu/packages/freedesktop.scm                       |    10 +-
 gnu/packages/games.scm                             |     6 +-
 gnu/packages/gcc.scm                               |     4 +-
 gnu/packages/gnome.scm                             |    54 +-
 gnu/packages/golang-check.scm                      |   129 +-
 gnu/packages/golang-crypto.scm                     |    25 +-
 gnu/packages/golang-web.scm                        |   291 +-
 gnu/packages/golang-xyz.scm                        |   109 +
 gnu/packages/golang.scm                            |    55 -
 gnu/packages/graphics.scm                          |    16 +-
 gnu/packages/graphviz.scm                          |     3 +
 gnu/packages/guile-xyz.scm                         |     8 +-
 gnu/packages/hexedit.scm                           |     5 +-
 gnu/packages/image-processing.scm                  |     4 +-
 gnu/packages/inklingreader.scm                     |     2 +-
 gnu/packages/ipfs.scm                              |    50 +-
 gnu/packages/julia-xyz.scm                         |    53 +-
 gnu/packages/linux.scm                             |    39 +-
 gnu/packages/lisp-xyz.scm                          | 45631 ++++++++++---------
 gnu/packages/llvm.scm                              |     8 +-
 gnu/packages/lua.scm                               |   123 +-
 gnu/packages/messaging.scm                         |     6 +-
 gnu/packages/networking.scm                        |    10 +-
 gnu/packages/ocaml.scm                             |     4 +-
 gnu/packages/package-management.scm                |    12 +-
 .../abseil-cpp-20200923.3-adjust-sysinfo.patch     |    60 +
 .../abseil-cpp-20200923.3-duration-test.patch      |    86 +
 .../abseil-cpp-20220623.1-no-kepsilon-i686.patch   |    23 +
 .../go-github-com-warpfork-go-wish-fix-tests.patch |    85 +
 gnu/packages/patches/lvm2-no-systemd.patch         |    18 +
 gnu/packages/patches/podman-program-lookup.patch   |   120 -
 gnu/packages/photo.scm                             |     4 +-
 gnu/packages/python-science.scm                    |     9 +-
 gnu/packages/python-xyz.scm                        |    33 +-
 gnu/packages/ruby.scm                              |     2 +-
 gnu/packages/security-token.scm                    |    25 +
 gnu/packages/shellutils.scm                        |    50 +
 gnu/packages/specifications.scm                    |    31 +
 gnu/packages/terminals.scm                         |     5 +-
 gnu/packages/virtualization.scm                    |     4 +-
 gnu/packages/web.scm                               |    59 +
 gnu/packages/wm.scm                                |    18 +-
 gnu/packages/xdisorg.scm                           |     6 +-
 gnu/packages/xorg.scm                              |    12 +-
 gnu/services/backup.scm                            |   236 +
 gnu/services/docker.scm                            |   323 +-
 gnu/services/shepherd.scm                          |    35 +-
 gnu/system.scm                                     |     8 +-
 gnu/system/image.scm                               |     6 +-
 gnu/system/images/visionfive2.scm                  |   122 +
 gnu/system/locale.scm                              |     4 +-
 gnu/tests/docker.scm                               |   131 +-
 guix/import/elpa.scm                               |     1 +
 guix/import/npm-binary.scm                         |   279 +
 guix/scripts/environment.scm                       |     4 +-
 guix/scripts/import.scm                            |     2 +-
 guix/scripts/import/{pypi.scm => npm-binary.scm}   |    64 +-
 guix/store/deduplication.scm                       |    79 +-
 tests/npm-binary.scm                               |   146 +
 tests/store-deduplication.scm                      |    58 +-
 85 files changed, 34519 insertions(+), 23598 deletions(-)
 create mode 100755 etc/git/post-merge
 create mode 100644 gnu/packages/aux-files/linux-libre/6.8-riscv.conf
 create mode 100644 
gnu/packages/patches/abseil-cpp-20200923.3-adjust-sysinfo.patch
 create mode 100644 
gnu/packages/patches/abseil-cpp-20200923.3-duration-test.patch
 create mode 100644 
gnu/packages/patches/abseil-cpp-20220623.1-no-kepsilon-i686.patch
 create mode 100644 
gnu/packages/patches/go-github-com-warpfork-go-wish-fix-tests.patch
 create mode 100644 gnu/packages/patches/lvm2-no-systemd.patch
 delete mode 100644 gnu/packages/patches/podman-program-lookup.patch
 create mode 100644 gnu/services/backup.scm
 create mode 100644 gnu/system/images/visionfive2.scm
 create mode 100644 guix/import/npm-binary.scm
 copy guix/scripts/import/{pypi.scm => npm-binary.scm} (58%)
 create mode 100755 tests/npm-binary.scm



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