branch master updated (5f86eebd24 -> 85e67f7fea)

[guix-commits]

cbaines pushed a change to branch master
in repository guix.

    from 5f86eebd24 gnu: disarchive: Update to 0.6.0.
     new 68bc23a5ba gnu: opencv: Update to 4.8.1.
     new 5a8079e219 gnu: tinydir: Update to 1.2.6.
     new 24518d038b gnu: fast-float: Update to 6.0.0.
     new 01ec7c3883 gnu: gemmi: Update to 0.6.4.
     new 6ab278b2e7 gnu: maeparser: Update to 1.3.1.
     new 805ee72237 gnu: coordgenlibs: Update to 3.0.2.
     new baa711441a gnu: yaehmop: Update to 2023.03.1.
     new 52cca41c6f gnu: avalon-toolkit: Update to 2.0.5a.
     new cc772e7f31 gnu: freesasa: Fix memerr tests.
     new e5bfc462dd gnu: rdkit: Update to 2023.09.4.
     new a779b98816 gnu: anubis: Update to 4.3.
     new 4f9ea64b5f gnu: qtpass: Update to 1.4.0.
     new 608b9a1c86 gnu: qtpass: Switch to qt-build-system and new package 
style.
     new 0ec31d7142 gnu: emacs-org-dailies: Update to 0-1.58e58d4.
     new ca927423f0 gnu: mupdf: Update to 1.23.10.
     new 8073252e06 gnu: retroarch: Update to 1.17.0.
     new 85e67f7fea gnu: runc: Update to 1.1.12 [security fixes].

The 17 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/local.mk                                       |   2 +
 gnu/packages/c.scm                                 |   6 +-
 gnu/packages/chemistry.scm                         | 175 ++++++++---------
 gnu/packages/cpp.scm                               |  10 +-
 gnu/packages/emacs-xyz.scm                         |   7 +-
 gnu/packages/emulators.scm                         |   4 +-
 gnu/packages/image-processing.scm                  |   4 +-
 gnu/packages/mail.scm                              |   6 +-
 gnu/packages/password-utils.scm                    |  84 +++------
 .../patches/avalon-toolkit-rdkit-fixes.patch       | 110 +++++++++++
 .../rdkit-unbundle-external-dependencies.patch     | 208 ++++++++++++---------
 .../patches/tinydir-fix-cbehave-test.patch         |  16 +-
 gnu/packages/pdf.scm                               |   4 +-
 gnu/packages/virtualization.scm                    |   4 +-
 14 files changed, 372 insertions(+), 268 deletions(-)
 create mode 100644 gnu/packages/patches/avalon-toolkit-rdkit-fixes.patch