01/11: gnu: Add r-r3cseq.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit d24c1078d2274e2b8b1094c64e6f90081f20faf0
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Tue Oct 31 11:57:19 2023 +0100

    gnu: Add r-r3cseq.
    
    * gnu/packages/bioconductor.scm (r-r3cseq): New variable.
    
    Change-Id: Ib62db1415ef3988ccef88ad600192246964b4d84
---
 gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3957a8f76f..45ab55a876 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7747,6 +7747,38 @@ matrix to solve the memory problem.")
 the Human Protein Atlas project.")
     (license license:artistic2.0)))
 
+(define-public r-r3cseq
+  (package
+    (name "r-r3cseq")
+    (version "1.46.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "r3Cseq" version))
+       (sha256
+        (base32 "1wpjsiy9qh45h3k5s79w4zhkma5h4gvyf2sa8l934mx0jl16k0q2"))))
+    (properties `((upstream-name . "r3Cseq")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-data-table
+           r-genomeinfodb
+           r-genomicranges
+           r-iranges
+           r-qvalue
+           r-rcolorbrewer
+           r-rsamtools
+           r-rtracklayer
+           r-sqldf
+           r-vgam))
+    (home-page "http://r3cseq.genereg.net/Site/index.html";)
+    (synopsis
+     "Analysis of Chromosome conformation capture and Next-generation 
sequencing")
+    (description
+     "This package is used for the analysis of long-range chromatin
+interactions from 3C-seq assay.")
+    (license license:gpl3)))
+
 (define-public r-raggedexperiment
   (package
     (name "r-raggedexperiment")