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04/16: gnu: edirect: Add bash-minimal to inputs.
From: |
guix-commits |
Subject: |
04/16: gnu: edirect: Add bash-minimal to inputs. |
Date: |
Fri, 20 Oct 2023 01:12:58 -0400 (EDT) |
apteryx pushed a commit to branch core-updates
in repository guix.
commit d6a7bc1dce75a3028f07d88768d273be790185fe
Author: Maxim Cournoyer <maxim.cournoyer@gmail.com>
AuthorDate: Fri Oct 20 01:04:49 2023 -0400
gnu: edirect: Add bash-minimal to inputs.
* gnu/packages/bioinformatics.scm (edirect): Delete trailing #t.
[inputs]: Add bash-minimal.
Change-Id: I28474c3ec5866b5e9f824d5d71e6cc8be5791f58
---
gnu/packages/bioinformatics.scm | 18 +++++++-----------
1 file changed, 7 insertions(+), 11 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a2a4dbf474..c807ec1bb8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4995,8 +4995,7 @@ quantitative phenotypes.")
(substitute* "rchive.go"
;; This go library does not have any license.
(("github.com/fiam/gounidecode/unidecode")
- "golang.org/rainycape/unidecode"))
- #t))))
+ "golang.org/rainycape/unidecode"))))))
(build-system perl-build-system)
(arguments
`(#:phases
@@ -5009,8 +5008,7 @@ quantitative phenotypes.")
;; Ignore errors about missing xtract.Linux and rchive.Linux.
(substitute* "pm-refresh"
(("cat \\\"\\$target")
- "grep ^[[:digit:]] \"$target"))
- #t))
+ "grep ^[[:digit:]] \"$target"))))
(replace 'install
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin"))
@@ -5026,8 +5024,7 @@ quantitative phenotypes.")
(symlink (string-append edirect-go "/bin/xtract.Linux")
(string-append bin "/xtract"))
(symlink (string-append edirect-go "/bin/rchive.Linux")
- (string-append bin "/rchive")))
- #t))
+ (string-append bin "/rchive")))))
(add-after 'install 'wrap-program
(lambda* (#:key outputs #:allow-other-keys)
;; Make sure everything can run in a pure environment.
@@ -5044,16 +5041,15 @@ quantitative phenotypes.")
,(dirname (which "grep"))
,(dirname (which "perl"))
,(dirname (which "uname"))))))
- (find-files out ".")))
- #t))
+ (find-files out ".")))))
(add-after 'wrap-program 'check
(lambda* (#:key outputs #:allow-other-keys)
(invoke (string-append (assoc-ref outputs "out")
"/bin/edirect.pl")
- "-filter" "-help")
- #t)))))
+ "-filter" "-help"))))))
(inputs
- (list edirect-go-programs
+ (list bash-minimal
+ edirect-go-programs
perl-html-parser
perl-encode-locale
perl-file-listing
- branch core-updates updated (8662e177bd -> 3a90987e8c), guix-commits, 2023/10/20
- 02/16: gnu: bioperl-minimal: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 01/16: gnu: ribotaper: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 03/16: gnu: repeat-masker: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 04/16: gnu: edirect: Add bash-minimal to inputs.,
guix-commits <=
- 05/16: gnu: mafft: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 09/16: gnu: shorah: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 07/16: gnu: roary: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 15/16: gnu: ccwl: Remove input labels., guix-commits, 2023/10/20
- 06/16: gnu: proteinortho: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 08/16: gnu: rsem: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 12/16: gnu: filtlong: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 11/16: gnu: ngless: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 13/16: gnu: nanopolish: Add bash-minimal to inputs., guix-commits, 2023/10/20
- 14/16: gnu: arriba: Add bash-minimal to inputs., guix-commits, 2023/10/20