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145/174: gnu: r-isoformswitchanalyzer: Update to 2.0.1.
From: |
guix-commits |
Subject: |
145/174: gnu: r-isoformswitchanalyzer: Update to 2.0.1. |
Date: |
Wed, 12 Jul 2023 08:32:17 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit a9d140996cdd7282cf98343ab5bd5d06ed440280
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Jul 11 20:16:53 2023 +0200
gnu: r-isoformswitchanalyzer: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.0.1.
[propagated-inputs]: Remove r-drimseq; add r-biocparallel, r-pfamanalyzer,
r-s4vectors,
r-saturn, r-summarizedexperiment, r-sva, and r-tidyr.
---
gnu/packages/bioconductor.scm | 12 +++++++++---
1 file changed, 9 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b1c609f746..6655be8c17 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5153,24 +5153,24 @@ possible.")
(define-public r-isoformswitchanalyzer
(package
(name "r-isoformswitchanalyzer")
- (version "1.21.0")
+ (version "2.0.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "IsoformSwitchAnalyzeR" version))
(sha256
- (base32 "1vzzsqjnkaffyxgvw6bsbxhgg1102cap2hsmzkhwzh6bvh02bwkx"))))
+ (base32 "1zjwhxlayz2sb77vspw280didhawj282i5gvxnydcdparg165zwf"))))
(properties `((upstream-name . "IsoformSwitchAnalyzeR")))
(build-system r-build-system)
(propagated-inputs
(list r-biobase
r-biocgenerics
+ r-biocparallel
r-biostrings
r-bsgenome
r-dbi
r-dexseq
r-dplyr
- r-drimseq
r-edger
r-futile-logger
r-genomeinfodb
@@ -5180,14 +5180,20 @@ possible.")
r-iranges
r-limma
r-magrittr
+ r-pfamanalyzer
r-plyr
r-rcolorbrewer
r-rcurl
r-readr
r-reshape2
r-rtracklayer
+ r-s4vectors
+ r-saturn
r-stringr
+ r-summarizedexperiment
+ r-sva
r-tibble
+ r-tidyr
r-tximeta
r-tximport
r-venndiagram
- 152/174: gnu: r-genomicfeatures: Update to 1.52.1., (continued)
- 152/174: gnu: r-genomicfeatures: Update to 1.52.1., guix-commits, 2023/07/12
- 127/174: gnu: r-rmarkdown: Update to 2.23., guix-commits, 2023/07/12
- 151/174: gnu: r-deseq2: Update to 1.40.2., guix-commits, 2023/07/12
- 164/174: gnu: r-variantfiltering: Update to 1.36.1., guix-commits, 2023/07/12
- 162/174: gnu: r-motifbreakr: Update to 2.14.2., guix-commits, 2023/07/12
- 171/174: gnu: r-basilisk: Update to 1.12.1., guix-commits, 2023/07/12
- 107/174: gnu: r-paws-developer-tools: Update to 0.3.1., guix-commits, 2023/07/12
- 123/174: gnu: r-locfit: Update to 1.5-9.8., guix-commits, 2023/07/12
- 135/174: gnu: r-norm: Update to 1.0-11.1., guix-commits, 2023/07/12
- 142/174: gnu: r-bambu: Update to 3.2.5., guix-commits, 2023/07/12
- 145/174: gnu: r-isoformswitchanalyzer: Update to 2.0.1.,
guix-commits <=
- 146/174: gnu: r-affy: Update to 1.78.1., guix-commits, 2023/07/12
- 102/174: gnu: r-intervals: Update to 0.15.4., guix-commits, 2023/07/12
- 156/174: gnu: r-summarizedexperiment: Update to 1.30.2., guix-commits, 2023/07/12
- 160/174: gnu: r-glmgampoi: Update to 1.12.2., guix-commits, 2023/07/12
- 161/174: gnu: r-lpsymphony: Update to 1.28.1., guix-commits, 2023/07/12
- 163/174: gnu: r-quasr: Update to 1.40.1., guix-commits, 2023/07/12
- 173/174: gnu: r-bionero: Update to 1.8.5., guix-commits, 2023/07/12