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branch master updated: gnu: Add r-chromomap.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-chromomap. |
Date: |
Thu, 02 Mar 2023 06:59:50 -0500 |
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rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new a7763e067d gnu: Add r-chromomap.
a7763e067d is described below
commit a7763e067d86908210758aab80d33e4f8b815b1c
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Tue Feb 28 01:07:34 2023 +0100
gnu: Add r-chromomap.
* gnu/packages/cran.scm (r-chromomap): New variable.
---
gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6dced3b93e..16314b33d7 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -306,6 +306,42 @@ are included as well.")
;; Any version of the GPL.
(license license:gpl3+)))
+;; The package sources include multiple non-minified JavaScript files and the
+;; v5.1.0 variant of d3.js. The d3.js file is not minified.
+(define-public r-chromomap
+ (package
+ (name "r-chromomap")
+ (version "4.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "chromoMap" version))
+ (sha256
+ (base32 "1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"))))
+ (properties `((upstream-name . "chromoMap")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-htmltools r-htmlwidgets))
+ (native-inputs (list r-knitr))
+ (home-page "https://cran.r-project.org/package=chromoMap")
+ (synopsis "Interactive genomic visualization of biological data")
+ (description
+ "This package provides interactive, configurable and graphics
+visualization of the chromosome regions of any living organism allowing users
+to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It
+introduces a special plot viz. the \"chromosome heatmap\" that, in addition to
+mapping elements, can visualize the data associated with chromosome
+elements (like gene expression) in the form of heat colors. Users can
+investigate the detailed information about the mappings (like gene names or
+total genes mapped on a location) or can view the magnified single or double
+stranded view of the chromosome at a location showing each mapped element in
+sequential order. The package provide multiple features like visualizing
+multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and
+labelling. The plots can be saved as HTML documents that can be customized
+and shared easily. In addition, you can include them in R Markdown or in R
+Shiny applications.")
+ (license (list license:gpl3
+ license:isc)))) ;for bundled d3js
+
(define-public r-collections
(package
(name "r-collections")
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