01/01: Merge branch 'staging' into core-updates

[guix-commits]

mbakke pushed a commit to branch core-updates
in repository guix.

commit 1d526f5035ce51305d8f414b8f55066adedb6f91
Merge: b4693f4a58 07140e8b10
Author: Marius Bakke <marius@gnu.org>
AuthorDate: Sat Sep 10 17:30:17 2022 +0200

    Merge branch 'staging' into core-updates

 gnu/packages/bioconductor.scm   |   6 +
 gnu/packages/bioinformatics.scm |   6 +
 gnu/packages/cran.scm           |  72 ++++++
 gnu/packages/crates-io.scm      |   6 +
 gnu/packages/emacs-xyz.scm      |   6 +
 gnu/packages/gnome.scm          | 553 ++++++++++++++++++++--------------------
 gnu/packages/golang.scm         |  28 ++
 gnu/packages/guile-xyz.scm      |   6 +
 gnu/packages/haskell-xyz.scm    |   5 +
 gnu/packages/java.scm           |   6 +
 gnu/packages/julia-xyz.scm      |   6 +
 gnu/packages/kde-frameworks.scm |   2 +-
 gnu/packages/linux.scm          |  16 +-
 gnu/packages/lisp-xyz.scm       |   6 +
 gnu/packages/mpd.scm            |  35 +++
 gnu/packages/ocaml.scm          |   6 +
 gnu/packages/perl.scm           |   6 +
 gnu/packages/python-science.scm |   6 +
 gnu/packages/python-xyz.scm     |  10 +-
 gnu/packages/ruby.scm           |   6 +
 gnu/packages/telephony.scm      |   6 +-
 gnu/packages/tex.scm            | 102 ++++++++
 22 files changed, 610 insertions(+), 291 deletions(-)

diff --cc gnu/packages/tex.scm
index 86d74b995b,a3c9689759..1f2553fa74
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@@ -7176,43 -6853,40 +7232,60 @@@ that is untidy; this package (though i
  designed class) helps alleviate this untidiness.")
      (license license:lppl)))
  
+ (define-public texlive-latex-pbox
+   (package
+     (inherit (simple-texlive-package
+               "texlive-latex-pbox"
+               (list "doc/latex/pbox/"
+                     "tex/latex/pbox/")
+               (base32 "0902snjidmhjml01zcppcpp4j6pidin1sdvfi7gnbb5v86zd5f0n")
+               #:trivial? #t))
+     (build-system texlive-build-system)
+     (home-page "https://ctan.org/pkg/pbox";)
+     (synopsis "\\parbox with a variable width")
+     (description
+      "@code{pbox} defines a \\pbox{<max width>}{<text>} command which adjusts
+ the box width to that of the enclosed text, up to the maximum width given.  
The
+ package also defines some associated length commands.")
+     (license license:gpl3+)))
+ 
 -(define-public texlive-latex-pdfpages
 -  (package
 -    (name "texlive-latex-pdfpages")
 -    (version (number->string %texlive-revision))
 -    (source (origin
 -              (method svn-fetch)
 -              (uri (texlive-ref "latex" "pdfpages"))
 -              (file-name (string-append name "-" version "-checkout"))
 -              (sha256
 -               (base32
 -                "140kl8r7g2ak2frjn5pmwiwibfynyfwp897r9vk8pypmn390lzr2"))))
 -    (build-system texlive-build-system)
 -    (arguments '(#:tex-directory "latex/pdfpages"))
 -    (home-page "https://www.ctan.org/pkg/pdfpages";)
 -    (synopsis "Include PDF documents in LaTeX")
 -    (description
 -     "This package simplifies the inclusion of external multi-page PDF
 +(define-public texlive-pdfpages
 +  (let ((template (simple-texlive-package
 +                   "texlive-pdfpages"
 +                   (list "doc/latex/pdfpages/"
 +                         "source/latex/pdfpages/"
 +                         "tex/latex/pdfpages/")
 +                   (base32
 +                    "0a68vxkygk20fp51fkp7nvs8mc7h6irdvxal8qsnn9zrgr965d76"))))
 +    (package
 +      (inherit template)
 +      (outputs '("out" "doc"))
 +      (arguments
 +       (substitute-keyword-arguments (package-arguments template)
 +         ((#:tex-directory _ '())
 +          "latex/pdfpages")
 +         ((#:build-targets _ '())
 +          #~(list "pdfpages.ins"))
 +         ((#:phases phases)
 +          #~(modify-phases #$phases
 +              (add-after 'unpack 'chdir
 +                (lambda _
 +                  (chdir "source/latex/pdfpages")))
 +              (replace 'copy-files
 +                (lambda _
 +                  (let ((origin #$(package-source this-package))
 +                        (source (string-append #$output
 +                                               "/share/texmf-dist/source"))
 +                        (doc (string-append #$output:doc
 +                                            "/share/texmf-dist/doc")))
 +                    (copy-recursively (string-append origin "/source") source)
 +                    (copy-recursively (string-append origin "/doc") 
doc))))))))
 +      (propagated-inputs
 +       (list texlive-tools texlive-oberdiek texlive-graphics texlive-eso-pic))
 +      (home-page "https://ctan.org/macros/latex/contrib/pdfpages";)
 +      (synopsis "Include PDF documents in LaTeX")
 +      (description
 +       "This package simplifies the inclusion of external multi-page PDF
  documents in LaTeX documents.  Pages may be freely selected and it is possible
  to put several logical pages onto each sheet of paper.  Furthermore a lot of
  hypertext features like hyperlinks and article threads are provided.  The