branch wip-r updated (e98ead7c2b -> 74f89220cc)

[guix-commits]

rekado pushed a change to branch wip-r
in repository guix.

    from e98ead7c2b gnu: r-with-tests: Update to 4.2.0.
     new 1c8f790d90 gnu: r-activepathways: Update to 1.1.0.
     new e1b35df747 gnu: r-wgcna: Update to 1.71.
     new ebe85fe0fb gnu: r-ldheatmap: Update to 1.0-6.
     new 03fd5d11a6 gnu: r-abn: Update to 2.7-1.
     new 6f86adcacc gnu: r-datawizard: Update to 0.4.1.
     new ad94944cd8 gnu: r-v8: Update to 4.2.0.
     new b9bb42fcf8 gnu: r-zoo: Update to 1.8-10.
     new 0dca66acbb gnu: r-scales: Update to 1.2.0.
     new f77896c3f1 gnu: r-polychrome: Update to 1.5.1.
     new d85e4ce493 gnu: r-mboost: Update to 2.9-7.
     new a16518465c gnu: r-shadowtext: Update to 0.1.2.
     new 764d5e9afe gnu: r-astsa: Update to 1.15.
     new bdae8e743c gnu: r-vegan: Update to 2.6-2.
     new 6261927193 gnu: r-fastghquad: Update to 1.0.1.
     new 9de808206b gnu: r-rstpm2: Update to 1.5.6.
     new 8d041f8c36 gnu: r-shinyfiles: Update to 0.9.2.
     new d075221d02 gnu: r-haven: Update to 2.5.0.
     new b678e35c7e gnu: r-ps: Update to 1.7.0.
     new 7b7a76c295 gnu: r-rcppxptrutils: Update to 0.1.2.
     new d4fe8d9bc6 gnu: r-circlize: Update to 0.4.15.
     new a43a9f229d gnu: r-ff: Update to 4.0.7.
     new 97a644df9c gnu: r-reshape: Update to 0.8.9.
     new 9e3bdf4cdb gnu: r-restrserve: Update to 1.1.1.
     new fa320ed1d7 gnu: r-sp: Update to 1.4-7.
     new 5a75fadbaf gnu: r-rmtstat: Update to 0.3.1.
     new 4772d36a71 gnu: r-extremes: Update to 2.1-2.
     new 636057f89f gnu: r-bbmle: Update to 1.0.25.
     new fbdea2ad10 gnu: r-energy: Update to 1.7-10.
     new f7dcbdc948 gnu: r-geometry: Update to 0.4.6.
     new dd91eb6e3d gnu: r-psych: Update to 2.2.5.
     new 604e34f538 gnu: r-broom: Update to 0.8.0.
     new b9a7263ffc gnu: r-pdist: Update to 1.2.1.
     new 89740dc88d gnu: r-hardyweinberg: Update to 1.7.5.
     new 68fc2ffe37 gnu: r-venndiagram: Update to 1.7.3.
     new 7942ecf6b9 gnu: r-cli: Update to 3.3.0.
     new 3763fab20d gnu: r-webshot: Update to 0.5.3.
     new 935c9c0e31 gnu: r-xfun: Update to 0.31.
     new 7afd1e6e11 gnu: r-vctrs: Update to 0.4.1.
     new 976d4929f5 gnu: r-uuid: Update to 1.1-0.
     new cc62ed562a gnu: r-tinytex: Update to 0.39.
     new 3f53a539a8 gnu: r-network: Update to 1.17.2.
     new c805c8f032 gnu: r-statnet-common: Update to 4.6.0.
     new 2c593d98e3 gnu: r-quantmod: Update to 0.4.20.
     new c9e18e5a01 gnu: r-tseries: Update to 0.10-51.
     new 38228bef51 gnu: r-import: Update to 1.3.0.
     new 725717f906 gnu: r-shinyace: Update to 0.4.2.
     new 455e0da890 gnu: r-radiant-data: Update to 1.4.2.
     new dff349e195 gnu: r-algdesign: Update to 1.2.1.
     new 5ff2810f98 gnu: r-fnn: Update to 1.1.3.1.
     new 47a115ce17 gnu: r-abc: Update to 2.2.1.
     new 9238ae4772 gnu: r-maptools: Update to 1.1-4.
     new 765e49c27c gnu: r-renv: Update to 0.15.5.
     new bb5cc7709e gnu: r-reticulate: Update to 1.25.
     new a505e4bad1 gnu: r-nbclust: Update to 3.0.1.
     new f522fc8036 gnu: r-rjags: Update to 4-13.
     new d26331e25f gnu: r-insight: Update to 0.17.1.
     new 35ffda0400 gnu: r-argparse: Update to 2.1.5.
     new 5ec0fead25 gnu: r-doby: Update to 4.6.13.
     new 1fa8c5d61d gnu: r-cmplot: Update to 4.1.0.
     new 4aa08d4b18 gnu: r-drtmle: Update to 1.1.1.
     new 00dedba7cb gnu: r-dofuture: Update to 0.12.2.
     new cb0aa3f19a gnu: r-labelled: Update to 2.9.1.
     new 2aa9b7edbc gnu: r-svdialogs: Update to 1.1.0.
     new b40563ec8e gnu: r-furrr: Update to 0.3.0.
     new 22aeec5de1 gnu: r-th-data: Update to 1.1-1.
     new a44c345a0e gnu: r-multcomp: Update to 1.4-19.
     new c341ba8690 gnu: r-emmeans: Update to 1.7.4-1.
     new d8742ad253 gnu: r-tmb: Update to 1.9.0.
     new eabb72fa36 gnu: r-bayestestr: Update to 0.12.1.
     new 2942730efe gnu: r-effectsize: Update to 0.7.0.
     new 5dd5e7a5b9 gnu: r-usethis: Update to 2.1.6.
     new 2691535105 gnu: r-summarytools: Update to 1.0.1.
     new ec6e650781 gnu: r-afex: Update to 1.1-1.
     new aaec25a878 gnu: r-biocmanager: Update to 1.30.18.
     new 8b4fa00528 gnu: r-rgl: Update to 0.108.3.2.
     new a0ef904571 gnu: r-ks: Update to 1.13.5.
     new 4af7a81639 gnu: r-circular: Update to 0.4-95.
     new 1f0515e2c6 gnu: r-activity: Update to 1.3.2.
     new ead7ef85f9 gnu: r-ouch: Update to 2.18.
     new d307706f0f gnu: r-admisc: Update to 0.27.
     new fa6507df49 gnu: r-colorramps: Update to 2.3.1.
     new ea5773ce5b gnu: r-rspectra: Update to 0.16-1.
     new 35bf09e97a gnu: r-flare: Update to 1.7.0.1.
     new 82b1108d78 gnu: r-rnexml: Update to 2.4.7.
     new d723cd6fe1 gnu: r-assertive-properties: Update to 0.0-5.
     new 064e7b45e4 gnu: r-spatialextremes: Update to 2.1-0.
     new 1e45cbc2df gnu: r-epi: Update to 2.46.
     new 0fec61bfe2 gnu: r-globals: Update to 0.15.0.
     new 0cc114200e gnu: r-parallelly: Update to 1.31.1.
     new 2b7040fa2d gnu: r-future: Update to 1.26.1.
     new 410b9ad6d3 gnu: r-future-apply: Update to 1.9.0.
     new 87ebcda359 gnu: r-shinybs: Update to 0.61.1.
     new 7c935d1679 gnu: r-minpack-lm: Update to 1.2-2.
     new 1f32eb49a1 gnu: r-moments: Update to 0.14.1.
     new 05df92c9a0 gnu: r-penalized: Update to 0.9-52.
     new 4decc24362 gnu: r-gmodels: Update to 2.18.1.1.
     new 785ab6d11c gnu: r-seqinr: Update to 4.2-16.
     new 43d821fd21 gnu: r-spdep: Update to 1.2-4.
     new d369ebcaee gnu: r-adegenet: Update to 2.1.6.
     new aa8ebfa081 gnu: r-polspline: Update to 1.1.20.
     new 1bfdcb8a5d gnu: r-rms: Update to 6.3-0.
     new a74ff0ca74 gnu: r-bookdown: Update to 0.26.
     new c203cd896d gnu: r-hierfstat: Update to 0.5-11.
     new 6a7d5a969f gnu: r-hapassoc: Update to 1.2-9.
     new 58281b9b1d gnu: r-r2html: Update to 2.3.3.
     new a6bd34b04c gnu: r-extrafont: Update to 0.18.
     new 7fbade23f0 gnu: r-aplot: Update to 0.1.4.
     new 814994ab9b gnu: r-arrow: Update to 8.0.0.
     new 87ab7cb9a7 gnu: r-mlapi: Update to 0.1.1.
     new 24384ce2d8 gnu: r-text2vec: Update to 0.6.1.
     new 5912fd3ae7 gnu: r-mcmcpack: Update to 1.6-3.
     new 09bad76a6f gnu: r-pbmcapply: Update to 1.5.1.
     new d10d4bd964 gnu: r-dalex: Update to 2.4.1.
     new 3b30867f2b gnu: r-xgboost: Update to 1.6.0.1.
     new e154a60306 gnu: r-leiden: Update to 0.4.2.
     new 8a94421ea1 gnu: r-parameters: Update to 0.18.0.
     new 5dd995967a gnu: r-rgdal: Update to 1.5-32.
     new 440a412d75 gnu: r-desolve: Update to 1.32.
     new c5efe05cec gnu: r-subplex: Update to 1.8.
     new 1f447dac23 gnu: r-reldist: Update to 1.7-1.
     new 7051363df4 gnu: r-mda: Update to 0.5-3.
     new 8990fdcf8e gnu: r-randtoolbox: Update to 2.0.0.
     new 7492cec89c gnu: r-gamlss: Update to 5.4-3.
     new ce2f3448dd gnu: r-alabama: Update to 2022.4-1.
     new 7086992008 gnu: r-fda: Update to 6.0.3.
     new 886e94a63c gnu: r-caret: Update to 6.0-92.
     new 7d06f5359d gnu: r-lim: Update to 1.4.7.
     new dd91d78d78 gnu: r-rsvg: Update to 2.3.1.
     new 9a35946f25 gnu: r-matrixextra: Update to 0.1.10.
     new f485e53e73 gnu: r-semtools: Update to 0.5-6.
     new 5a6a208869 gnu: r-rockchalk: Update to 1.8.152.
     new d02f55b3f6 gnu: r-lisreltor: Update to 0.1.5.
     new 5000e0889b gnu: r-bdgraph: Update to 2.67.
     new 3ebf01f6ae gnu: r-cdm: Update to 8.1-12.
     new 8870ea600e gnu: r-tam: Update to 4.0-16.
     new 24cda60d46 gnu: r-irtoys: Update to 0.2.2.
     new f9e48d80cc gnu: r-packrat: Update to 0.8.0.
     new f2232092a6 gnu: r-optimx: Update to 2022-4.30.
     new 31648f2568 gnu: r-projpred: Update to 2.1.2.
     new a07c842d12 gnu: r-brms: Update to 2.17.0.
     new aaff025528 gnu: r-scrypt: Update to 0.1.4.
     new 1d53789f0c gnu: r-iml: Update to 0.11.0.
     new d5dc1ccfba gnu: r-spatstat-utils: Update to 2.3-1.
     new cf87fbd096 gnu: r-spatstat-sparse: Update to 2.1-1.
     new c6e7d82258 gnu: r-spatstat-data: Update to 2.2-0.
     new 2c0222b747 gnu: r-spatstat-core: Update to 2.4-4.
     new af16155b12 gnu: r-exactranktests: Update to 0.8-35.
     new 610d25d126 gnu: r-igraph: Update to 1.3.1.
     new 02192c173a gnu: r-tidypredict: Update to 0.4.9.
     new 4f2b9bc058 gnu: r-tidytext: Update to 0.3.3.
     new 31bce95c86 gnu: r-lsa: Update to 0.73.3.
     new 92f72414e1 gnu: r-altmeta: Update to 4.0.
     new e4500a3376 gnu: r-seuratobject: Update to 4.1.0.
     new b372b3ba30 gnu: r-seurat: Update to 4.1.1.
     new 7c1759544a gnu: r-lpme: Update to 1.1.3.
     new e02c4659d4 gnu: r-mlr3pipelines: Update to 0.4.1.
     new 77c25b9309 gnu: r-paradox: Update to 0.9.0.
     new 51e6998564 gnu: r-mlr3learners: Update to 0.5.3.
     new e104af2b0e gnu: r-bbotk: Update to 0.5.3.
     new 4569e129a0 gnu: r-mlr3tuning: Update to 0.13.1.
     new f315172e9a gnu: r-pkgdown: Update to 2.0.3.
     new d88e33f9bd gnu: r-qdapregex: Update to 0.7.5.
     new 071efaba18 gnu: r-pdftools: Update to 3.2.1.
     new 38b84409d3 gnu: r-rmisc: Update to 1.5.1.
     new 0d1a9d760a gnu: r-opencpu: Update to 2.2.8.
     new 8a117bf2b7 gnu: r-exactextractr: Update to 0.8.2.
     new 12922526bc gnu: r-stringfish: Update to 0.15.7.
     new eecd042fd8 gnu: r-tensorflow: Update to 2.9.0.
     new 94e4b6858f gnu: r-keras: Update to 2.9.0.
     new 1c9ffab793 gnu: r-rfigshare: Update to 0.3.8.
     new 96a206ee6d gnu: r-zoolog: Update to 1.0.1.
     new 4ba62d61d5 gnu: r-mlearning: Update to 1.1.1.
     new 9d7b14ebaa gnu: r-mass: Update to 7.3-57.
     new 716189e33e gnu: r-dichromat: Update to 2.0-0.1.
     new 4b5fb4d896 gnu: r-ggplot2: Update to 3.3.6.
     new 60f5299d44 gnu: r-knitr: Update to 1.39.
     new 0a8c464adf gnu: r-testthat: Update to 3.1.4.
     new 1d3d09b20b gnu: r-tibble: Update to 3.1.7.
     new c4afb17c56 gnu: r-dplyr: Update to 1.0.9.
     new 4e102cf4b3 gnu: r-ade4: Update to 1.7-19.
     new fa1933be24 gnu: r-checkmate: Update to 2.1.0.
     new d03013ac10 gnu: r-roxygen2: Update to 7.2.0.
     new f6a0823589 gnu: r-openssl: Update to 2.0.2.
     new 9a732cdca1 gnu: r-httr: Update to 1.4.3.
     new 84a93501f5 gnu: r-rcpparmadillo: Update to 0.11.1.1.0.
     new 4cdc177740 gnu: r-rmarkdown: Update to 2.14.
     new c00c6eb3ec gnu: r-rsqlite: Update to 2.2.14.
     new d060e6450b gnu: r-segmented: Update to 1.5-0.
     new ff0188938e gnu: r-dt: Update to 0.23.
     new bafa3e1867 gnu: r-glmnet: Update to 4.1-4.
     new 91bb7dc789 gnu: r-rtsne: Update to 0.16.
     new a7063b1abb gnu: r-bigmemory: Update to 4.6.1.
     new 4e5b04f17d gnu: r-matrixstats: Update to 0.62.0.
     new 3ec5251c83 gnu: r-hmisc: Update to 4.7-0.
     new fb1a5c33ba gnu: r-gtools: Update to 3.9.2.1.
     new a23bad8593 gnu: r-gdata: Update to 2.18.0.1.
     new 40e8ae749c gnu: r-gplots: Update to 3.1.3.
     new a89160b887 gnu: r-lars: Update to 1.3.
     new 73733828e4 gnu: r-randomforest: Update to 4.7-1.1.
     new 652e36195c gnu: r-mclust: Update to 5.4.10.
     new 1f940e076e gnu: r-pcapp: Update to 2.0-1.
     new 0debdec33c gnu: r-rrcov: Update to 1.7-0.
     new 1a0b1fd9cc gnu: r-quantreg: Update to 5.93.
     new 9b03621722 gnu: r-nloptr: Update to 2.0.3.
     new 80b0bc03d0 gnu: r-car: Update to 3.0-13.
     new a17e4e03ad gnu: r-tclust: Update to 1.5-1.
     new 65f283fe07 gnu: r-clubsandwich: Update to 0.5.6.
     new 2dc0bb13d3 gnu: r-logspline: Update to 2.1.17.
     new ec3ec2204b gnu: r-datasaurus: Update to 0.1.6.
     new 452488c157 gnu: r-desctools: Update to 0.99.45.
     new 0438ec7f84 gnu: r-binom: Update to 1.1-1.1.
     new aff6a9ae01 gnu: nlopt: Update to 2.7.1.
     new 239bb52241 gnu: r-rcurl: Update to 1.98-1.6.
     new 74f89220cc gnu: r-biostrings: Patch for R 4.2.0.

The 214 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm |  29 +-
 gnu/packages/cran.scm         | 722 +++++++++++++++++++++---------------------
 gnu/packages/maths.scm        |  43 +--
 gnu/packages/statistics.scm   | 181 ++++++-----
 4 files changed, 505 insertions(+), 470 deletions(-)