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161/242: gnu: python-pynndescent: Update to 0.5.6.
From: |
guix-commits |
Subject: |
161/242: gnu: python-pynndescent: Update to 0.5.6. |
Date: |
Wed, 11 May 2022 18:03:20 -0400 (EDT) |
apteryx pushed a commit to branch wip-ipython-polyglossia
in repository guix.
commit 03301090fd64d35371adc6e292e7dd53a8e6421a
Author: Maxim Cournoyer <maxim.cournoyer@gmail.com>
AuthorDate: Mon Apr 18 17:43:43 2022 -0400
gnu: python-pynndescent: Update to 0.5.6.
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6.
[phases]{check}: Skip the test_weighted_minkowski test.
[native-inputs, propagated-inputs]: Re-indent.
---
gnu/packages/machine-learning.scm | 18 +++++++++++-------
1 file changed, 11 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index b765257d98..5f14453f01 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1210,13 +1210,13 @@ for scientific computing and data science (e.g. BLAS
and OpenMP).")
(define-public python-pynndescent
(package
(name "python-pynndescent")
- (version "0.5.5")
+ (version "0.5.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pynndescent" version))
(sha256
- (base32 "10pqqqc3jkpw03cyzy04slxmpgyhqnlgbyk0c1cv7kqr5d0zhzbs"))))
+ (base32 "0p3jsdcprjfzz7qf5674dsqfpvdn6p4wgqikg7b6ki5abf433yv1"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -1224,12 +1224,16 @@ for scientific computing and data science (e.g. BLAS
and OpenMP).")
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
- (add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "--pyargs" "pynndescent")))))))
- (native-inputs
- (list python-pytest))
+ (invoke "python" "-m" "pytest" "--pyargs" "pynndescent"
+ ;; wminkowski no longer exists in scipy 1.8.0 (see:
+ ;; https://github.com/lmcinnes/pynndescent/issues/177)
+ "-k" "not test_weighted_minkowski")))))))
+ (native-inputs (list python-pytest))
(propagated-inputs
- (list python-joblib python-llvmlite python-numba python-scikit-learn
+ (list python-joblib
+ python-llvmlite
+ python-numba
+ python-scikit-learn
python-scipy))
(home-page "https://github.com/lmcinnes/pynndescent")
(synopsis "Nearest neighbor descent for approximate nearest neighbors")
- 153/242: gnu: Add python-jupyterlab-server., (continued)
- 153/242: gnu: Add python-jupyterlab-server., guix-commits, 2022/05/11
- 142/242: gnu: python-httpx: Update to 0.22.0., guix-commits, 2022/05/11
- 151/242: gnu: Add python-dictpath., guix-commits, 2022/05/11
- 143/242: gnu: python-uvicorn: Update to 0.17.6., guix-commits, 2022/05/11
- 154/242: gnu: python-hypothesis-6.23: Update to 6.43.3., guix-commits, 2022/05/11
- 155/242: gnu: python-numpy: Update to 1.21.6 and parallelize build/tests., guix-commits, 2022/05/11
- 148/242: gnu: Add python-aioredis., guix-commits, 2022/05/11
- 156/242: gnu: python-llvmlite: Update to 0.38.0., guix-commits, 2022/05/11
- 160/242: gnu: python-scikit-learn: Parallelize build and test suite., guix-commits, 2022/05/11
- 159/242: gnu: python-pandas: Update to 1.4.2., guix-commits, 2022/05/11
- 161/242: gnu: python-pynndescent: Update to 0.5.6.,
guix-commits <=
- 163/242: gnu: python-jupyter-server: Update to 1.16.0., guix-commits, 2022/05/11
- 164/242: gnu: python-voila: Update to 0.3.5., guix-commits, 2022/05/11
- 165/242: gnu: python-sparqlwrapper: Update to 2.0.0., guix-commits, 2022/05/11
- 173/242: gnu: mbed-tools: Update to 7.53.0 and relax click version requirement., guix-commits, 2022/05/11
- 175/242: gnu: python-parse-type: Update to 0.6.0, fixing build., guix-commits, 2022/05/11
- 178/242: gnu: python-amqp: Update to 5.1.1 and enable tests., guix-commits, 2022/05/11
- 166/242: gnu: python-sparqlkernel: Use gexps and fix inputs., guix-commits, 2022/05/11
- 172/242: gnu: python-readme-renderer: Update to 34.0., guix-commits, 2022/05/11
- 176/242: gnu: Add python-bson., guix-commits, 2022/05/11
- 169/242: gnu: xeus: Update to 2.4.1., guix-commits, 2022/05/11