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branch staging updated (f5fe0082ab -> da3be3ff4f)


From: guix-commits
Subject: branch staging updated (f5fe0082ab -> da3be3ff4f)
Date: Mon, 9 May 2022 09:11:32 -0400 (EDT)

civodul pushed a change to branch staging
in repository guix.

    from f5fe0082ab gnu: libgit2: Work around time-dependent unit test.
     add b01622f57d gnu: flatpak: Use G-expressions.
     add f785299af1 gnu: flatpak: Do not leak GDK_PIXBUF_MODULE_FILE into the 
sandbox.
     add 09fcd191e1 gnu: rust-pyo3: Allow compilation with Criterion 0.3.5.
     add f2eb0d3922 home: services: fish: Fix incorrect ".config" file name.
     add 4d3c142e0b gnu: openssh: Trust Guix store directory
     add 313ae43f51 gnu: Add Avizo.
     add c00906b1dd gnu: gama: Update to 2.19.
     add 03f660027c gnu: font-gnu-unifont: Update to 14.0.03.
     add 653eef9b41 gnu: Add urh.
     add 9d7248cd87 services: Add missing 'description' fields.
     add 2c408520f5 home: shells: Migrate fish to xdg-configuration-files.
     add ccd682cb98 gnu: lensfun: Update to 0.3.3.
     add 606ba14480 gnu: zsh: Build and install info pages.
     add 6ce8d9be43 gnu: Add envytools.
     add 1bb177d084 gnu: Add python-flatten-json.
     add 73eeeeafbb tests: Avoid starting services to check whether they're 
running.
     add c1719a0adf publish: Send uncached narinfo replies from the main thread.
     add 325d53d5f6 gnu: Add r-afpt.
     add ca831dfa09 gnu: Add r-zlog.
     add 9eca13094d gnu: guix: Update to c1719a0.
     add b06ecc5751 services: guix-publish: Use socket activation when possible.
     add d2c663711e guix system: Highlight search results.
     add 0a64b629ae gnu: Add Liquid War 6.
     add fbcd25f5ef gnu: Add ocaml-camlp-streams.
     add 3ee7e8c5b9 gnu: camlp5: Update to 8.00.03.
     add d0da63c576 gnu: ocaml-num: Fix race condition.
     add 39e88fa2c8 gnu: ocaml-dot-merlin: Update to 4.5-414.
     add c026db3f46 gnu: ocaml: Update to 4.14.
     add 33366f196e gnu: Add python-deepmerge.
     add b47aae7f85 gnu: tailon: Update to 1.4.3.
     add 7b9ee58925 tests: Fix tailon test.
     add bff4199e9b gnu: ocaml-ppx-sexp-message: Update to 0.15.0.
     add cd19c36509 gnu: ocaml-ppx-string: Update to 0.15.0.
     add bbdc69dcd1 gnu: ocaml-ppx-enumerate: Update to 0.15.0.
     add ad3f1faad6 gnu: ocaml-ppx-optional: Update to 0.15.0.
     add 19972e112c gnu: ocaml-ppx-assert: Update to 0.15.0.
     add 2a528d96a0 gnu: ocaml-ppx-cold: Update to 0.15.0.
     add f01e73eac9 gnu: ocaml-ppx-js-style: Update to 0.15.0.
     add 7678b531a0 gnu: ocaml-ppx-here: Update to 0.15.0.
     add dd35fdf651 gnu: ocaml-bin-prot: Update to 0.15.0.
     add 59ec6c00b0 gnu: ocaml-time-now: Update to 0.15.0.
     add 1383cf4b3a gnu: ocaml-markup: Update to 1.0.3.
     add 6514485998 gnu: ocaml-bigstringaf: Update to 0.9.0.
     add d1f604c20f gnu: ocaml-splittable-random: Update to 0.15.0.
     add c87661143a gnu: ocaml-ppx-fixed-literal: Update to 0.15.0.
     add 2fd97d5a05 gnu: ocaml-fieldslib: Update to 0.15.0.
     add bbdf8dacbf gnu: ocaml-typerep: Update to 0.15.0.
     add fe940507b1 gnu: ocaml-ppx-typerep-conv: Update to 0.15.0.
     add 217180c1f3 gnu: ocaml-bisect-ppx: Update to 2.8.1.
     add 3e9c40158a gnu: ocaml-utop: Update to 2.9.1.
     add c49e0ef477 gnu: ocaml-ppx-variants-conv: Update to 0.15.0.
     add 0fe56e5bb2 gnu: ocaml-ppx-let: Update to 0.15.0.
     add b45833f512 gnu: ocaml-ppx-module-timer: Update to 0.15.0.
     add 26e3face3d gnu: ocaml-ppx-custom-printf: Update to 0.15.0.
     add 20c090e572 gnu: ocaml-ppx-pipebang: Update to 0.15.0.
     add 25a027b949 gnu: dune: Update to 3.1.1.
     add 6abb5fe8a9 gnu: ocaml-ppx-bench: Update to 0.15.0.
     add 2708cece85 gnu: ocaml-integers: Update to 0.7.0.
     add 43b95fbe7a gnu: ocaml-ctypes: Update to 0.20.1.
     add a9e8b6e7a2 gnu: ocaml-opam-file-format: Update to 2.1.4.
     add 044b42720d gnu: Add ocaml-ppx-ignore-instrumentation.
     add 823005c6a3 gnu: Add ocaml-ppx-log.
     add 564a310065 gnu: Add ocaml-ppx-disable-unused-warnings.
     add 143b9d3a3d gnu: ocaml-ppx-jane: Update to 0.15.0.
     add ae7c2c4b16 gnu: ocaml-ppx-bin-prot: Update to 0.15.0.
     add ffdd749ad5 gnu: ocaml-cstruct: Update to 6.1.0.
     add f076cdba02 gnu: ocaml-ppx-optcomp: Update to 0.15.0.
     add cda4ca0ab5 gnu: ocaml-variantslib: Update to 0.15.0.
     add ab8d68cadd gnu: ocaml-easy-format: Update to 1.3.3.
     add b27a2366ab gnu: ocaml-hex: Update to 1.5.0.
     add 556ccb4ae1 gnu: coq: Update to 8.15.1.
     add e8a3a1d279 gnu: ocaml-ppxlib: Update to 0.25.0.
     add 4fe2489816 gnu: ocaml-core: Update to 0.15.0.
     add 0cea8f99aa gnu: ocaml-base-bigstring: Update to 0.15.0.
     add d1a4653bf6 gnu: ocaml-jane-street-headers: Update to 0.15.0.
     add 72ca35c539 gnu: ocaml-ppx-compare: Update to 0.15.0.
     add 85b23e64e2 gnu: ocaml-ppx-base: Update to 0.15.0.
     add ae08819ca5 gnu: ocaml-ppx-stable: Update to 0.15.0.
     add 4ce554c6da gnu: ocaml-jst-config: Update to 0.15.1.
     add db20b6c133 gnu: ocaml-ppx-sexp-value: Update to 0.15.0.
     add 88ee602039 gnu: ocaml-ppx-hash: Update to 0.15.0.
     add 6d97a08525 gnu: ocaml-parsexp: Update to 0.15.0.
     add a342c32cd5 gnu: ocaml-ppx-fields-conv: Update to 0.15.0.
     add be83b59d31 gnu: ocaml-spawn: Update to 0.15.1.
     add 3d5d09abb8 gnu: ocaml-re: Update to 1.10.4.
     add e719135a57 gnu: ocaml-cmdliner: Update to 1.1.0.
     add c34ac580dc gnu: ocamlformat: Update to 0.21.0.
     add 674124b1ed gnu: ocaml-uuidm: Update to 0.9.8.
     add 6b4124cdcc nls: Update translations.
     add 774f8804ba gexp: Add 'references-file'.
     add eaebc7f2b7 file-systems: Avoid load-time warnings when attempting to 
load (guix store).
     add a76fa226c8 linux-container: 'call-with-container' relays SIGTERM and 
SIGINT.
     add f6c9763984 linux-container: Ensure signal-handling asyncs get a chance 
to run.
     add 391bd14359 linux-container: Add #:child-is-pid1? parameter to 
'call-with-container'.
     add 3682bd4003 Add (guix least-authority).
     add 002bcb7eb0 services: dicod: Rewrite using 'least-authority-wrapper'.
     add fd57ce267c services: dicod: Use 'make-inetd-constructor'.
     add 211fe3f66e services: bitlbee: Use 'make-inetd-constructor'.
     add f5ef68ba98 services: ipfs: Use 'least-authority-wrapper'.
     add 19df5f2423 services: wesnothd: Grant write access to /var/run/wesnothd.
     add 53dbc6fd9a services: wesnothd: Use 'least-authority-wrapper'.
     add dac4efc466 services: quassel: Use 'least-authority-wrapper'.
     add fee06d5aaa services: opendht: Use 'least-authority-wrapper'.
     add 098f2eea33 gnu: ungoogled-chromium: Update to 101.0.4951.41-1.
     add 9dafaf1635 gnu: python-anndata: Remove python-xlrd-1.
     add 5caad9f252 gnu: python-cooler: Use more recent cytoolz.
     add 4642a50d52 gnu: Remove python-cytoolz-for-cooler.
     add 4571b218b5 gnu: Remove python-xlrd-1.
     add b1dd32d8e3 gnu: htslib-for-stringtie: Inherit from htslib-1.12.
     add 6075d25143 services: bitlbee: Preserve 'PURPLE_PLUGIN_PATH'.
     add acbf5b1022 gnu: aws-c-common: Only support i686 and x86_64.
     add a9b4d69c9c gnu: aws-checksums: Fix comment formatting.
     add 4dbb1520e2 gnu: aws-c-event-stream: Fix comment formatting.
     add d230c67068 gnu: aws-c-io: Fix comment formatting.
     add c7805de435 gnu: aws-c-cal: Fix comment formatting.
     add e8f2855d73 gnu: aws-c-sdkutils: Fix comment formatting.
     add d7c8a83549 gnu: aws-c-http: Fix comment formatting.
     add b8c4bb3e0d gnu: aws-c-compression: Fix comment formatting.
     add d62c101991 gnu: aws-c-auth: Fix comment formatting.
     add b62d4872ba gnu: aws-c-s3: Fix comment formatting.
     add a822f3e2d0 gnu: aws-c-mqtt: Fix comment formatting.
     add fec71efeae gnu: aws-crt-cpp: Fix comment formatting.
     add a5a408c3a7 gnu: aws-lc: Fix checksum and enable tests.
     add af856afb6c gnu: s2n: Link to aws-lc as libcrypto dependency.
     add a8fde99e80 gnu: aws-sdk-cpp: Remove openssl input.
     add 75b7f495d0 gnu: ugrep: Update to 3.7.9.
     add 35e5d2ce56 gnu: Add emacs-git-email.
     add 94b1905580 gnu: apl: Update to 1.8-r1550.
     add fe6ba5e902 gnu: apl: Remove input labels.
     add 67b10f18c7 gnu: apl: Use G-expressions.
     add c152174ca2 gnu: fmt: Update to 8.1.1.
     add 9bf9da2571 gnu: spdlog: Update to 1.10.0.
     add 8ffd8fc64e gnu: bear: Update to 3.0.19.
     add 919fdd6fcc gnu: Add python-sybil.
     add f728d1dcd2 gnu: Add python-pydispatcher.
     add fce913281f gnu: Add python-queuelib.
     add c0c16d6b84 gnu: Add python-itemadapter.
     add d219d48cce gnu: Add python-protego.
     add 76b6337650 gnu: Add python-parsel.
     add d9a7f652e2 gnu: Add python-itemloaders.
     add f455c1e313 gnu: Add python-scrapy.
     add 290934c8fc gnu: Add r-adductdata.
     add 495bc9f962 gnu: Add r-orgmassspecr.
     add 9c19db8c1d gnu: Add r-adductomicsr.
     add 7494f4b4ab gnu: Add r-agimicrorna.
     add 39d6c13fda gnu: python-hic2cool: Fix build.
     add 2a37f174be services: Make sure Shepherd destructors match constructors.
     add f49b1a10f3 gnu: Add xschem.
     add 954ff74bc8 gnu: mescc-tools: Update to 1.4.0.
     add c14f1e3195 gnu: m2-planet: Update to 1.9.0.
     add 6b588da368 gnu: mes: Update to 0.24.
     add ac2857e042 gnu: linux-libre 5.15: Update to 5.15.37.
     add 39bdf71db1 gnu: linux-libre 4.19: Update to 4.19.241.
     add 654f878f0b gnu: Mutt: Update to 2.2.4.
     add 7855a9366b services: pipefs: Correctly handle lack of extensions.
     add a3b6a4df6c gnu: petsc-openmpi: Fix header inclusions.
     add 0d3c2c9543 gnu: sundials: Fix various issues.
     add 4c509a73b7 gnu: sundials-openmpi: Add HYPRE dependency.
     add d1a6a795b3 gnu: sundials: Update to 6.2.0.
     add e648957b7b gnu: sundials: Add 5.8.0.
     add e131f705dd gnu: dealii: Remove trailing booleans.
     add d34f941c33 gnu: dealii-openmpi: Remove input labels.
     add 240b604eda gnu: dealii: Add SUNDIALS dependency.
     add 8b2d266607 gnu: dealii: Update to 9.3.3.
     add 9916933a04 gnu: icecat: Update to 91.9.0-guix0-preview1 [security 
fixes].
     add b80ca672de gnu: ungoogled-chromium: Update to 101.0.4951.54-1.
     add a1b0fc8133 gnu: cm: Update to 0.4.0.
     add d809e71df2 gnu: python-pari-jupyter: Update to 1.4.1.
     add 34dbbb9172 gnu: icedove: Update to 91.9.0 [fixes CVE-2022-1520].
     add 6829d61bc5 gnu: Add n2p2.
     add 0780164f1f gnu: b4: Update to 0.8.0.
     add 0f024554e6 transformations: Preserve transformation order in package 
property.
     add 312879fddc gnu: Add byacc.
     add b95e3dc17c gnu: python-multipart: Fix test failure due to PyYAML 6.
     add 43992cdbea gnu: python-anyio: Update to 3.5.0.
     add b4da7c2133 gnu: Add python-databases.
     add 471f650498 gnu: Add python-kneed.
     add ce1746819b gnu: python-traitlets: Update to 5.1.1.
     add a2fb35e43d gnu: python-ipython: Add missing input.
     add c018871c04 gnu: slurm: Update to 20.11.9 [fixes 
CVE-2022-{29500,29501,29502}].
     add 3d05105705 gnu: slurm: Add 21.08.8.
     add 7727757a73 gnu: ytfzf: Update to 2.3.
     add 9e630a362d gnu: Add python-arpeggio.
     add 253fc14777 gnu: nftables: Update to 1.0.2.
     add de4e4506c1 gnu: cava: Use G-expressions.
     add 27fc4ae397 gnu: cava: Fix build failure
     add e47b080474 gnu: Add python-traittypes.
     add ea3cfeb665 gnu: Add python-ipympl.
     add 0d73287d97 gnu: Add python-mercantile.
     add 221bf543e8 gnu: Add python-xyzservices.
     add 549e478f23 gnu: Add python-ipydatawidgets.
     add 166e0dfc44 gnu: ncdu-2: Update to 2.1.2.
     add 5cf81294c0 gnu: links: Update to 2.26.
     add 1123da369d gnu: links: Use configure-flags.
     add d540c6792b gnu: links: Remove input labels.
     add 22b794a4a7 gnu: links: Use gexps.
     add 984add419c gnu: mescc-tools: Update supported-systems.
     add 53628d6e3b gnu: Add dezyne.
     add 4188d211c7 gnu: monero: Update to 0.17.3.2.
     add 5e27c54e08 gnu: monero-gui: Update to 0.17.3.2.
     add a2d44231ea gnu: Add Guix-Modules.
     add 69505bec93 gnu: fenics-dolfin: Honor #:tests? flag.
     add 9d5160bc8a gnu: fenics: Honor #:tests? flag.
     add b7d2644cd0 gnu: fenics: Fix sanity check.
     add 34f49d15e6 gnu: python-vedo: Honor #:tests? flag.
     add a5fec06868 gnu: python-vedo: Remove input labels.
     add 9edc0f3dbb gnu: python-vedo: Disable sanity check.
     add e606e02844 gnu: python-vedo: Update to 2022.2.0.
     add 06d244197b gnu: tcl: Add tcl-tls to packages.
     add 4a3f8994f4 gnu: tcl-tls: Add 'release-monitoring-url' and 
'upstream-name' properties.
     add 8079bd3da8 gnu: tcl-tls: Use a gexp.
     add d16298196c gnu: rust-parking-lot-core-0.8: Update to 0.8.4.
     add f02f8db381 gnu: rust-parking-lot-0.11: Update to 0.11.2.
     add 70f6d2302c gnu: rust-lock-api-0.4: Update to 0.4.5.
     add bec6bf64bc gnu: rust-instant-0.1: Update to 0.1.9.
     add f550c0ccb0 gnu: Add pigx-sars-cov-2.
     add 6f5cbac67d gnu: pigx-sars-cov-2: Update to 0.0.7.
     add 4f15745b95 gnu: Add rust-page-size-0.4.
     add 83c1f017a6 gnu: nar-herder: Update to 0-6.ea997c6.
     add 0e9429544f gnu: dezyne: Use new package style.
     add ee70ed5bf5 gnu: Add rust-blake3-1.
     add fe794295ab gnu: ocaml-reactivedata: Update to 0.3.
     add 513f54dc5d gnu: ocaml-cmdliner: Update to 1.1.1.
     add 02182c623e gnu: openjdk17: Update to 17.0.2
     add ffcec65878 gnu: fldigi: Update to 4.1.22.
     add 5320ba2054 gnu: flrig: Update to 1.4.05.
     add 4b08526865 gnu: Remove linux-libre@4.4 configuration files.
     add db5c49fc62 gnu: enblend-enfuse: Remove input labels.
     add 51b716f7f2 gnu: enblend-enfuse: Fix build.
     add be6d5783ba gnu: tor: Update to 0.4.7.7.
     add cc796dc320 gnu: tor: Use G-expressions.
     add 04544c8f1c gnu: epson-inkjet-printer-escpr: Update to 1.7.18.
     add 20456fd016 gnu: epson-inkjet-printer-escpr: Use HTTPS home page.
     add ad99a09abe gnu: epson-inkjet-printer-escpr: Use new style.
     add fdeb2479aa gnu: gptfdisk: Update to 1.0.9.
     add 4e3d04a33b gnu: gptfdisk: Use new input style.
     add cb75465645 gnu: gptfdisk: Correct gettext input type.
     add 4e27e4652f gnu: nsd: Update to 4.4.0.
     add 73b0b298bf gnu: mcelog: Update to 181.
     add 110ed3433d gnu: rasdaemon: Update to 0.6.8.
     add 0bb0984724 gnu: acpica: Update to 20220331.
     add 69fff28de8 gnu: libshout: Update to 2.4.6.
     add 28741adda9 gnu: audit: Update to 3.0.8.
     add fcab7ac841 gnu: lziprecover: Update to 1.23.
     add c12095c680 gnu: lrzip: Update to 0.651.
     add 2e99cb15e6 gnu: lunzip: Update to 1.13.
     add f36a0908f2 gnu: clzip: Update to 1.13.
     add bf1bb2b546 gnu: lzlib: Update to 1.13.
     add d1c3e35e8f gnu: plzip: Update to 1.10.
     add d2c5754ef1 gnu: ispell: Update to 3.4.05.
     add 04d09bc372 gnu: vim: Update to 8.2.4912.
     add fc7fc13716 gnu: tor: Only run sandbox tests on some architectures.
     add a30085f545 gnu: ddrescue: Update to 1.26.
     add 769202ecf8 gnu: nnn: Update to 4.5.
     add 755e702db7 gnu: nnn: Use G-expressions.
     add 1b61c75ff7 gnu: fasm: Update to 1.73.30.
     add 9b66f0a74d gnu: butt: Update to 0.1.34.
     add cb8e483c78 gnu: butt: Use new input style where convenient.
     add 027c21dcf7 gnu: butt: Use G-expressions.
     add 668313e07f gnu: butt: Use conventional docdir.
     add eb1eac4762 gnu: carla: Remove input labels.
     add acfc0feae4 gnu: carla: Use G-expressions.
     add a9c295c4af gnu: carla: Prepare for cross-compilation.
     add ef2a240100 gnu: libcap-ng: Update to 0.8.3.
     add 644a966772 gnu: libcap-ng: Omit static libraries.
     add 140d4f2101 gnu: fio: Update to 3.30.
     add 3d84a72966 gnu: fio: Use G-expressions.
     add f226e051f5 gnu: byacc: Update to 20220128.
     add e48b5484af gnu: libgit2: Work around time-dependent unit test.
     add 51bbcc91b4 gnu: emacs-git-email: Fixes build of package.
     add c1f60c5c34 gnu: cool-retro-term: Upgrade to 1.2.0.
     add 8b1e46cb3e gnu: cool-retro-term: Lint package definition.
     add bbdd8c35e8 gnu: lf: Update to 27
     add 4b13273d3a gnu: lf: Remove input labels.
     add aa6bbbb1ea gnu: Add ruby-asciidoctor-multipage.
     add 522c842a1c gnu: font-iosevka: Update to 15.2.0.
     add f374a4a1e5 gnu: gnome-shell-extension-burn-my-windows: Update to 15.
     add 594c38da35 gnu: gnome-shell-extension-blur-my-shell: Update to 29.
     add 2d908f9d56 gnu: emacs-helm-org-contacts: Update to 20201202.
     add 1439bc9dbb gnu: Add python-click-8.
     add 4f3fd912a7 gnu: Add python-proselint.
     add cb9db2b0ea gnu: Add emacs-flymake-proselint.
     add f9157b736b gnu: emacs-mct: Add Info manual.
     add 1140dcda5c gnu: Add emacs-logos.
     add 9b30bc1da3 gnu: Add emacs-lin.
     add d51f764629 gnu: Add emacs-pulsar.
     add cbaad2f568 gnu: emacs-modus-themes: Update to 2.3.2.
     add 09e720309e gnu: Add python-style.
     add 7bacea65ac gnu: mangohud: Update to 0.6.7.
     add 57a88a2cfe gnu: git-annex: Update to 10.20220504.
     add 9017c2406b gnu: gcc-11: Update to 11.3.0.
     add ff1fd3b012 gnu: tabixpp: Use G-expressions.
     add a990547952 gnu: tabixpp: Use #:make-flags.
     add cbda00c499 gnu: tabixpp: Use build tools specific to the target.
     add 086c7c143c gnu: tabixpp: Fix cross-compilation.
     add 713dadf47e gnu: fastahack: Use G-expressions.
     add 9258576eea gnu: fastahack: Use compiler specific to the build target.
     add 9a68c07507 gnu: vcflib: Use G-expressions.
     add 9047a31152 gnu: vcflib: Find submodule sources in native-inputs during 
cross-compilation.
     add 8d25887d87 gnu: vcflib: Set absolute path to pkg-config.
     add 9f9c2f200b gnu: Add cl-zip.
     add 4668454f64 gnu: libgit@1.1: Patch time-dependent unit test.
     add fcf0949c7d gnu: valgrind: Sort imports alphabetically.
     add 4d1a88312c gnu: valgrind: Allow ld.so symbols to be found.
     add bb8c5f5205 gnu: valgrind: Remove input labels.
     add fda20f14f0 gnu: kicad: Update to 6.0.5.
     add 998eda3067 gnu: LLVM, Clang: Update to 14.0.3.
     add b69fc147d7 gnu: Add xkblayout.
     add 4980630d1e gnu: python-numpy-next: Update to 1.22.3.
     new da3be3ff4f Merge branch 'master' into staging

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                                        |     3 +-
 gnu/build/linux-container.scm                      |    78 +-
 gnu/build/shepherd.scm                             |     3 +-
 gnu/home/services/shells.scm                       |     4 +-
 gnu/local.mk                                       |    15 +-
 gnu/packages/admin.scm                             |    40 +-
 gnu/packages/algebra.scm                           |     4 +-
 gnu/packages/apl.scm                               |    75 +-
 gnu/packages/aspell.scm                            |     7 +-
 gnu/packages/assembly.scm                          |     6 +-
 gnu/packages/audio.scm                             |   218 +-
 gnu/packages/aux-files/linux-libre/4.4-i686.conf   |  8632 -------
 gnu/packages/aux-files/linux-libre/4.4-x86_64.conf |  8441 -------
 gnu/packages/benchmark.scm                         |    67 +-
 gnu/packages/bioconductor.scm                      |    97 +
 gnu/packages/bioinformatics.scm                    |   308 +-
 gnu/packages/build-tools.scm                       |     4 +-
 gnu/packages/c.scm                                 |    46 +-
 gnu/packages/chromium.scm                          |    15 +-
 gnu/packages/compression.scm                       |    26 +-
 gnu/packages/coq.scm                               |     4 +-
 gnu/packages/cpp.scm                               |     8 +-
 gnu/packages/cran.scm                              |    69 +
 gnu/packages/crates-io.scm                         |    42 +-
 gnu/packages/crypto.scm                            |    46 +-
 gnu/packages/cups.scm                              |    72 +-
 gnu/packages/databases.scm                         |    23 +
 gnu/packages/dezyne.scm                            |   115 +
 gnu/packages/disk.scm                              |    35 +-
 gnu/packages/dns.scm                               |     6 +-
 gnu/packages/emacs-xyz.scm                         |   226 +-
 gnu/packages/engineering.scm                       |    57 +-
 gnu/packages/finance.scm                           |    31 +-
 gnu/packages/fonts.scm                             |    28 +-
 gnu/packages/games.scm                             |    43 +
 gnu/packages/gcc.scm                               |     5 +-
 gnu/packages/gnome-xyz.scm                         |     8 +-
 gnu/packages/gnuzilla.scm                          |    20 +-
 gnu/packages/gps.scm                               |     4 +-
 gnu/packages/graphics.scm                          |    10 +-
 gnu/packages/hardware.scm                          |    30 +-
 gnu/packages/haskell-apps.scm                      |     4 +-
 gnu/packages/image-viewers.scm                     |   147 +-
 gnu/packages/java.scm                              |     4 +-
 gnu/packages/jupyter.scm                           |    61 +
 gnu/packages/linux.scm                             |    39 +-
 gnu/packages/lisp-xyz.scm                          |    36 +-
 gnu/packages/llvm.scm                              |     8 +-
 gnu/packages/logging.scm                           |    42 +-
 gnu/packages/mail.scm                              |     4 +-
 gnu/packages/maths.scm                             |   229 +-
 gnu/packages/mes.scm                               |    17 +-
 gnu/packages/ncdu.scm                              |     4 +-
 gnu/packages/ocaml.scm                             |   598 +-
 gnu/packages/package-management.scm                |   248 +-
 gnu/packages/parallel.scm                          |    21 +-
 .../dealii-fix-compiliation-with-boost-1.78.patch  |    40 -
 gnu/packages/patches/dealii-fix-sundials.patch     |    60 -
 .../patches/emacs-git-email-missing-parens.patch   |    27 +
 .../flatpak-unset-gdk-pixbuf-for-sandbox.patch     |    19 +
 gnu/packages/patches/nftables-fix-makefile.patch   |    34 +
 .../openssh-trust-guix-store-directory.patch       |    40 +
 gnu/packages/patches/tor-sandbox-i686.patch        |    36 -
 .../patches/ungoogled-chromium-system-nspr.patch   |    12 +-
 .../valgrind-fix-default-debuginfo-path.patch      |   100 +
 gnu/packages/patches/ytfzf-programs.patch          |   643 -
 gnu/packages/patches/ytfzf-updates.patch           |    44 -
 gnu/packages/photo.scm                             |    74 +-
 gnu/packages/pretty-print.scm                      |     4 +-
 gnu/packages/python-check.scm                      |    29 +
 gnu/packages/python-science.scm                    |    91 +-
 gnu/packages/python-web.scm                        |   111 +
 gnu/packages/python-xyz.scm                        |   433 +-
 gnu/packages/radio.scm                             |    72 +-
 gnu/packages/ruby.scm                              |    33 +
 gnu/packages/search.scm                            |     4 +-
 gnu/packages/shells.scm                            |    11 +-
 gnu/packages/simulation.scm                        |    49 +-
 gnu/packages/ssh.scm                               |     8 +-
 gnu/packages/tcl.scm                               |    46 +
 gnu/packages/terminals.scm                         |    25 +-
 gnu/packages/tls.scm                               |    20 +-
 gnu/packages/tor.scm                               |    57 +-
 gnu/packages/valgrind.scm                          |    67 +-
 gnu/packages/version-control.scm                   |    15 +-
 gnu/packages/vim.scm                               |    16 +-
 gnu/packages/web-browsers.scm                      |    55 +-
 gnu/packages/wm.scm                                |    30 +
 gnu/packages/xdisorg.scm                           |    25 +
 gnu/packages/xiph.scm                              |     6 +-
 gnu/services/base.scm                              |    74 +-
 gnu/services/databases.scm                         |    17 +-
 gnu/services/desktop.scm                           |    27 +-
 gnu/services/dict.scm                              |    64 +-
 gnu/services/games.scm                             |    33 +-
 gnu/services/kerberos.scm                          |    12 +-
 gnu/services/lirc.scm                              |     6 +-
 gnu/services/mail.scm                              |    15 +-
 gnu/services/messaging.scm                         |   111 +-
 gnu/services/monitoring.scm                        |     9 +-
 gnu/services/networking.scm                        |   163 +-
 gnu/services/nfs.scm                               |    24 +-
 gnu/services/spice.scm                             |     5 +-
 gnu/services/sysctl.scm                            |     4 +-
 gnu/services/virtualization.scm                    |     9 +-
 gnu/services/vpn.scm                               |    13 +-
 gnu/services/web.scm                               |    15 +-
 gnu/system/file-systems.scm                        |     5 +-
 gnu/tests/messaging.scm                            |    21 +-
 gnu/tests/version-control.scm                      |    32 +-
 gnu/tests/web.scm                                  |     6 +-
 guix/gexp.scm                                      |    44 +
 guix/least-authority.scm                           |   135 +
 guix/scripts/publish.scm                           |    82 +-
 guix/scripts/system/search.scm                     |     1 +
 guix/transformations.scm                           |     2 +-
 po/doc/guix-cookbook.de.po                         |    10 +-
 po/doc/guix-cookbook.fr.po                         |    10 +-
 po/doc/guix-cookbook.ko.po                         |    15 +-
 po/doc/guix-cookbook.sk.po                         |    97 +-
 po/doc/guix-manual.de.po                           | 25102 ++++++++++---------
 po/doc/guix-manual.es.po                           | 24763 +++++++++---------
 po/doc/guix-manual.fr.po                           | 24816 +++++++++---------
 po/doc/guix-manual.pt_BR.po                        | 24691 +++++++++---------
 po/doc/guix-manual.ru.po                           | 24712 +++++++++---------
 po/doc/guix-manual.zh_CN.po                        | 24688 +++++++++---------
 po/guix/LINGUAS                                    |     1 +
 po/guix/cs.po                                      |  1049 +-
 po/guix/da.po                                      |  1052 +-
 po/guix/de.po                                      |  1063 +-
 po/guix/eo.po                                      |  1055 +-
 po/guix/es.po                                      |  1107 +-
 po/guix/fa.po                                      |  1049 +-
 po/guix/fi.po                                      |  1049 +-
 po/guix/fr.po                                      |  1055 +-
 po/guix/hu.po                                      |  1052 +-
 po/guix/it.po                                      |  1049 +-
 po/guix/{uk.po => ja.po}                           |  1082 +-
 po/guix/ko.po                                      |  1054 +-
 po/guix/nl.po                                      |  1055 +-
 po/guix/oc.po                                      |  1049 +-
 po/guix/pl.po                                      |  1050 +-
 po/guix/pt_BR.po                                   |  1055 +-
 po/guix/ru.po                                      |  1050 +-
 po/guix/si.po                                      |  1049 +-
 po/guix/sk.po                                      |  1066 +-
 po/guix/sr.po                                      |  1053 +-
 po/guix/sv.po                                      |  1052 +-
 po/guix/ta.po                                      |  1052 +-
 po/guix/uk.po                                      |  1050 +-
 po/guix/vi.po                                      |  1051 +-
 po/guix/zh_CN.po                                   |  1048 +-
 po/packages/da.po                                  |  1982 +-
 po/packages/de.po                                  |  1982 +-
 po/packages/eo.po                                  |  1982 +-
 po/packages/es.po                                  |  1982 +-
 po/packages/fa.po                                  |  1982 +-
 po/packages/fi.po                                  |  1982 +-
 po/packages/fr.po                                  |  1986 +-
 po/packages/hu.po                                  |  1982 +-
 po/packages/it.po                                  |  1982 +-
 po/packages/ko.po                                  |  1982 +-
 po/packages/nl.po                                  |  1982 +-
 po/packages/oc.po                                  |  1982 +-
 po/packages/pl.po                                  |  1982 +-
 po/packages/pt_BR.po                               |  1982 +-
 po/packages/sk.po                                  |  1982 +-
 po/packages/sr.po                                  |  1982 +-
 po/packages/zh_CN.po                               |  1982 +-
 tests/gexp.scm                                     |    18 +
 tests/publish.scm                                  |    23 +
 tests/transformations.scm                          |    14 +-
 172 files changed, 111408 insertions(+), 121344 deletions(-)
 delete mode 100644 gnu/packages/aux-files/linux-libre/4.4-i686.conf
 delete mode 100644 gnu/packages/aux-files/linux-libre/4.4-x86_64.conf
 create mode 100644 gnu/packages/dezyne.scm
 delete mode 100644 
gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch
 delete mode 100644 gnu/packages/patches/dealii-fix-sundials.patch
 create mode 100644 gnu/packages/patches/emacs-git-email-missing-parens.patch
 create mode 100644 
gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch
 create mode 100644 gnu/packages/patches/nftables-fix-makefile.patch
 create mode 100644 
gnu/packages/patches/openssh-trust-guix-store-directory.patch
 delete mode 100644 gnu/packages/patches/tor-sandbox-i686.patch
 create mode 100644 
gnu/packages/patches/valgrind-fix-default-debuginfo-path.patch
 delete mode 100644 gnu/packages/patches/ytfzf-programs.patch
 delete mode 100644 gnu/packages/patches/ytfzf-updates.patch
 create mode 100644 guix/least-authority.scm
 copy po/guix/{uk.po => ja.po} (91%)



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