01/02: gnu: python-cooler: Use more recent cytoolz.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 5caad9f2526a352fbe78ba3c687ab8bf20162ca0
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon May 2 13:33:16 2022 +0200

    gnu: python-cooler: Use more recent cytoolz.
    
    * gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: 
Replace
    python-cytoolz-for-cooler with python-cytoolz.
---
 gnu/packages/bioinformatics.scm | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 40ccba247c..4a3600fd0c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12652,6 +12652,13 @@ fasta subsequences.")
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         ;; cooler requests cytoolz<0.11.  It only uses cytoolz for "compose",
+         ;; which composes two functions.
+         (add-after 'unpack 'use-recent-cytoolz
+           (lambda _
+             (substitute* '("requirements.txt"
+                            "cooler.egg-info/requires.txt")
+               (("cytoolz.*<.*0.11") "cytoolz"))))
          (add-after 'unpack 'patch-tests
            (lambda _
              (substitute* "tests/test_create.py"
@@ -12677,7 +12684,7 @@ fasta subsequences.")
      (list python-asciitree
            python-biopython
            python-click
-           python-cytoolz-for-cooler
+           python-cytoolz
            python-dask
            python-h5py
            python-multiprocess