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branch master updated: gnu: r-catalyst: Update description.
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guix-commits |
Subject: |
branch master updated: gnu: r-catalyst: Update description. |
Date: |
Thu, 14 Apr 2022 05:45:11 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 7d990e775e gnu: r-catalyst: Update description.
7d990e775e is described below
commit 7d990e775e76c0a898c7d4b53691d1932fc0e6eb
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Wed Apr 13 13:21:03 2022 +0200
gnu: r-catalyst: Update description.
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo
markup
and clarify a sentence.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++------------
1 file changed, 17 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b492214971..1401053570 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13791,20 +13791,25 @@ relevant, and the minimum expression of the most
abundant condition.")
r-summarizedexperiment))
(native-inputs
(list r-knitr))
- (home-page
- "https://github.com/HelenaLC/CATALYST")
+ (home-page "https://github.com/HelenaLC/CATALYST")
(synopsis "Cytometry data analysis tools")
(description
- "This package is Cytometry dATa anALYSis Tools (CATALYST). Mass
-cytometry (CyTOF) uses heavy metal isotopes rather than fluorescent tags as
-reporters to label antibodies, thereby substantially decreasing spectral
-overlap and allowing for examination of over 50 parameters at the single cell
-level. While spectral overlap is significantly less pronounced in CyTOF than
-flow cytometry, spillover due to detection sensitivity, isotopic impurities,
-and oxide formation can impede data interpretability. We designed
-CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for
-preprocessing of cytometry data, including i) normalization using bead
-standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
+ "This package is @dfn{Cytometry dATa anALYSis Tools} (CATALYST). Mass
+cytometry like @dfn{Cytometry by time of flight} (CyTOF) uses heavy metal
+isotopes rather than fluorescent tags as reporters to label antibodies,
+thereby substantially decreasing spectral overlap and allowing for examination
+of over 50 parameters at the single cell level. While spectral overlap is
+significantly less pronounced in CyTOF than flow cytometry, spillover due to
+detection sensitivity, isotopic impurities, and oxide formation can impede
+data interpretability. @code{CATALYST} was designed to provide a pipeline for
+preprocessing of cytometry data, including:
+
+@enumerate
+@item normalization using bead standards;
+@item single-cell deconvolution;
+@item bead-based compensation.
+@end enumerate
+")
(license license:gpl2+)))
(define-public r-erma
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