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branch master updated: gnu: Add r-xmapbridge.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-xmapbridge. |
Date: |
Sat, 27 Nov 2021 04:46:29 -0500 |
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rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 60abbbf gnu: Add r-xmapbridge.
60abbbf is described below
commit 60abbbf8c5c03f57364c0a0a6af3685cc8660772
Author: Mădălin Ionel Patrașcu <MadalinIonel.Patrascu@mdc-berlin.de>
AuthorDate: Sat Nov 27 10:46:01 2021 +0100
gnu: Add r-xmapbridge.
* gnu/packages/bioconductor.scm (r-xmapbridge): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 80c264d..cdaf97d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4731,6 +4731,33 @@ protein-protein interaction databases and integrative
resources such as
molecular functions, respectively, and produces intuitive graphical outputs.")
(license license:gpl3)))
+(define-public r-xmapbridge
+ (package
+ (name "r-xmapbridge")
+ (version "1.52.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "xmapbridge" version))
+ (sha256
+ (base32 "1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi"))))
+ (properties `((upstream-name . "xmapbridge")))
+ (build-system r-build-system)
+ (home-page "https://git.bioconductor.org/packages/xmapbridge")
+ (synopsis "Display numeric data in the web based genome browser X:MAP")
+ (description
+ "The package @code{xmapbridge} can plot graphs in the X:Map genome
+browser. X:Map uses the Google Maps API to provide a scrollable view of the
+genome. It supports a number of species, and can be accessed at
+@url{http://xmap.picr.man.ac.uk}. This package exports plotting files in a
+suitable format. Graph plotting in R is done using calls to the functions
+@code{xmap.plot} and @code{xmap.points}, which have parameters that aim to be
+similar to those used by the standard plot methods in R. These result in data
+being written to a set of files (in a specific directory structure) that
+contain the data to be displayed, as well as some additional meta-data
+describing each of the graphs.")
+ (license license:lgpl3)))
+
(define-public r-xvector
(package
(name "r-xvector")
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