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116/116: gnu: Add r-bsgenome-drerio-ucsc-danrer11.
From: |
guix-commits |
Subject: |
116/116: gnu: Add r-bsgenome-drerio-ucsc-danrer11. |
Date: |
Wed, 24 Nov 2021 06:17:08 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 639bfeca2bb4026f0f65a9d418dda538055900f8
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Nov 23 17:22:00 2021 +0100
gnu: Add r-bsgenome-drerio-ucsc-danrer11.
* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer11): New
variable.
---
gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 5d29a3a..97392a9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -286,6 +286,28 @@ RepeatMasker (RM mask), and (4) the mask of repeats from
Tandem Repeats
Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.")
(license license:artistic2.0)))
+(define-public r-bsgenome-drerio-ucsc-danrer11
+ (package
+ (name "r-bsgenome-drerio-ucsc-danrer11")
+ (version "1.4.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BSgenome.Drerio.UCSC.danRer11"
+ version 'annotation))
+ (sha256
+ (base32 "08a928mqzv2jxngjcs4yr6ni1b9z9al6jdngwi438j8hm41cwk4v"))))
+ (properties `((upstream-name . "BSgenome.Drerio.UCSC.danRer11")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
"https://bioconductor.org/packages/BSgenome.Drerio.UCSC.danRer11")
+ (synopsis "Full genome sequences for Danio rerio (UCSC version danRer11)")
+ (description
+ "This package provides full genome sequences for Danio rerio (Zebrafish)
+as provided by UCSC (danRer11, May 2017) and stored in Biostrings objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
(package
(name "r-bsgenome-hsapiens-1000genomes-hs37d5")
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- 65/116: gnu: r-graphlayouts: Update to 0.7.2., guix-commits, 2021/11/24
- 76/116: gnu: r-rcdd: Update to 1.5., guix-commits, 2021/11/24
- 79/116: gnu: r-conquer: Update to 1.2.1., guix-commits, 2021/11/24
- 84/116: gnu: r-seqminer: Update to 8.2., guix-commits, 2021/11/24
- 91/116: gnu: r-ragg: Update to 1.2.0., guix-commits, 2021/11/24
- 97/116: gnu: r-tensorflow: Update to 2.7.0., guix-commits, 2021/11/24
- 100/116: gnu: r-paws-common: Update to 0.3.14., guix-commits, 2021/11/24
- 109/116: gnu: r-dt: Update to 0.20., guix-commits, 2021/11/24
- 116/116: gnu: Add r-bsgenome-drerio-ucsc-danrer11.,
guix-commits <=
- 55/116: gnu: r-gamlss-dist: Update to 6.0-1., guix-commits, 2021/11/24
- 48/116: gnu: r-gmp: Update to 0.6-2.1., guix-commits, 2021/11/24
- 24/116: gnu: r-tinytex: Update to 0.35., guix-commits, 2021/11/24
- 35/116: gnu: r-mosaic: Update to 1.8.3., guix-commits, 2021/11/24
- 63/116: gnu: r-xgboost: Update to 1.5.0.2., guix-commits, 2021/11/24
- 61/116: gnu: r-dae: Update to 3.2-13., guix-commits, 2021/11/24
- 67/116: gnu: r-rngwell: Update to 0.10-7., guix-commits, 2021/11/24
- 75/116: gnu: r-argon2: Update to 0.4-0., guix-commits, 2021/11/24
- 90/116: gnu: r-clustree: Update to 0.4.4., guix-commits, 2021/11/24
- 103/116: gnu: r-tibble: Update to 3.1.6., guix-commits, 2021/11/24