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05/356: gnu: Add r-msfeatures.
From: |
guix-commits |
Subject: |
05/356: gnu: Add r-msfeatures. |
Date: |
Sun, 7 Nov 2021 18:10:41 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 4a92ab58f62156b3f906b4560538c7e0cf339452
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Nov 4 17:38:09 2021 +0000
gnu: Add r-msfeatures.
* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 914bf5a..2c61754 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13100,6 +13100,38 @@ well as misc helper functions, that are used across
high-level data structure
within the R for Mass Spectrometry packages.")
(license license:artistic2.0)))
+(define-public r-msfeatures
+ (package
+ (name "r-msfeatures")
+ (version "1.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MsFeatures" version))
+ (sha256
+ (base32 "020ifrijlzdd3qk4bhd9z4knj5d87ildrkl3wcmxvwkvs9rbh8rq"))))
+ (properties `((upstream-name . "MsFeatures")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mscoreutils" ,r-mscoreutils)
+ ("r-protgenerics" ,r-protgenerics)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/RforMassSpectrometry/MsFeatures")
+ (synopsis "Functionality for mass spectrometry features")
+ (description
+ "The MsFeature package defines functionality for Mass Spectrometry
+features. This includes functions to group (LC-MS) features based on some of
+their properties, such as retention time (coeluting features), or correlation
+of signals across samples. This packge hence allows to group features, and
+its results can be used as an input for the @code{QFeatures} package which
+allows to aggregate abundance levels of features within each group. This
+package defines concepts and functions for base and common data types,
+implementations for more specific data types are expected to be implemented in
+the respective packages (such as e.g. @code{xcms}).")
+ (license license:artistic2.0)))
+
(define-public r-biocio
(package
(name "r-biocio")
- branch master updated (bd41e59 -> 30b67fd), guix-commits, 2021/11/07
- 01/356: gnu: r-with-tests: Update to 4.1.2., guix-commits, 2021/11/07
- 02/356: gnu: r-with-tests: Remove trailing #T., guix-commits, 2021/11/07
- 05/356: gnu: Add r-msfeatures.,
guix-commits <=
- 03/356: gnu: r-with-tests: Update patch to DESCRIPTION file., guix-commits, 2021/11/07
- 04/356: guix: Upgrade to Bioconductor 3.14., guix-commits, 2021/11/07
- 06/356: gnu: r-biocparallel: Update to 1.28.0., guix-commits, 2021/11/07
- 08/356: gnu: r-biocversion: Update to 3.14.0., guix-commits, 2021/11/07
- 07/356: gnu: r-aneufinder: Update to 1.22.0., guix-commits, 2021/11/07
- 09/356: gnu: r-biocgenerics: Update to 0.40.0., guix-commits, 2021/11/07
- 12/356: gnu: r-decipher: Update to 2.22.0., guix-commits, 2021/11/07
- 11/356: gnu: r-cummerbund: Update to 2.36.0., guix-commits, 2021/11/07
- 14/356: gnu: r-delayedarray: Update to 0.20.0., guix-commits, 2021/11/07
- 18/356: gnu: r-affy: Update to 1.72.0., guix-commits, 2021/11/07