89/353: gnu: r-systempiper: Update to 2.0.0.

[guix-commits]

rekado pushed a commit to branch r-updates
in repository guix.

commit 1b31f4224bf3835a209e12e5b3e1c39bc531ee15
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Nov 4 22:04:09 2021 +0000

    gnu: r-systempiper: Update to 2.0.0.
    
    * gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
    [propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, 
r-deseq2, r-dot,
    r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
    r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
    r-biocgenerics and r-htmlwidgets.
---
 gnu/packages/bioconductor.scm | 24 +++++-------------------
 1 file changed, 5 insertions(+), 19 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b7b1b6a..f04e96c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4442,44 +4442,30 @@ unmodeled, or latent sources of noise.")
 (define-public r-systempiper
   (package
     (name "r-systempiper")
-    (version "1.26.3")
+    (version "2.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "systemPipeR" version))
        (sha256
         (base32
-         "01l35l5zj87qkarrbal9la6kshk3j7k8hy3iimv3gdnnz4axmvs7"))))
+         "0kibr47z7ml13hpl955qcr4wp2z4nq7gjiinyk30wivrwrng5sg1"))))
     (properties `((upstream-name . "systemPipeR")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-annotate" ,r-annotate)
-       ("r-assertthat" ,r-assertthat)
-       ("r-batchtools" ,r-batchtools)
+     `(("r-biocgenerics" ,r-biocgenerics)
        ("r-biostrings" ,r-biostrings)
        ("r-crayon" ,r-crayon)
-       ("r-deseq2" ,r-deseq2)
-       ("r-dot" ,r-dot)
-       ("r-edger" ,r-edger)
-       ("r-genomicfeatures" ,r-genomicfeatures)
        ("r-genomicranges" ,r-genomicranges)
        ("r-ggplot2" ,r-ggplot2)
-       ("r-go-db" ,r-go-db)
-       ("r-gostats" ,r-gostats)
-       ("r-iranges" ,r-iranges)
-       ("r-limma" ,r-limma)
+       ("r-htmlwidgets" ,r-htmlwidgets)
        ("r-magrittr" ,r-magrittr)
-       ("r-pheatmap" ,r-pheatmap)
-       ("r-rjson" ,r-rjson)
        ("r-rsamtools" ,r-rsamtools)
-       ("r-rsvg" ,r-rsvg)
        ("r-s4vectors" ,r-s4vectors)
        ("r-shortread" ,r-shortread)
        ("r-stringr" ,r-stringr)
        ("r-summarizedexperiment" ,r-summarizedexperiment)
-       ("r-testthat" ,r-testthat)
-       ("r-yaml" ,r-yaml)
-       ("r-variantannotation" ,r-variantannotation)))
+       ("r-yaml" ,r-yaml)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/tgirke/systemPipeR";)