[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
05/14: gnu: Add r-biomvrcns.
From: |
guix-commits |
Subject: |
05/14: gnu: Add r-biomvrcns. |
Date: |
Tue, 7 Sep 2021 08:48:42 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 2794024dc276e6472137c33853bbef35eabac186
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Sep 7 14:37:59 2021 +0200
gnu: Add r-biomvrcns.
* gnu/packages/bioconductor.scm (r-biomvrcns): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 577727f..b6e7c87 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14249,6 +14249,34 @@ design.")
design.")
(license license:lgpl2.1+)))
+(define-public r-biomvrcns
+ (package
+ (name "r-biomvrcns")
+ (version "1.32.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "biomvRCNS" version))
+ (sha256
+ (base32
+ "0wyzj422smr4m9mswzn9inc1sn86pnia7jmd6k28nd2a7fjyrm16"))))
+ (properties `((upstream-name . "biomvRCNS")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicranges" ,r-genomicranges)
+ ("r-gviz" ,r-gviz)
+ ("r-iranges" ,r-iranges)
+ ("r-mvtnorm" ,r-mvtnorm)))
+ (home-page "https://bioconductor.org/packages/biomvRCNS")
+ (synopsis "Copy number study and segmentation for multivariate biological
data")
+ (description
+ "In this package, a @dfn{Hidden Semi Markov Model} (HSMM) and one
+homogeneous segmentation model are designed and implemented for segmentation
+genomic data, with the aim of assisting in transcripts detection using high
+throughput technology like RNA-seq or tiling array, and copy number analysis
+using aCGH or sequencing.")
+ (license license:gpl2+)))
+
(define-public r-tximeta
(package
(name "r-tximeta")
- branch master updated (44db980 -> 5cfe5dd), guix-commits, 2021/09/07
- 02/14: gnu: Add r-biscuiteerdata., guix-commits, 2021/09/07
- 05/14: gnu: Add r-biomvrcns.,
guix-commits <=
- 11/14: gnu: Add r-biotmle., guix-commits, 2021/09/07
- 01/14: gnu: Add r-mus-musculus., guix-commits, 2021/09/07
- 03/14: gnu: Add r-mvcclass., guix-commits, 2021/09/07
- 10/14: gnu: Add r-biotip., guix-commits, 2021/09/07
- 07/14: gnu: Add r-bionet., guix-commits, 2021/09/07
- 04/14: gnu: Add r-biomvcclass., guix-commits, 2021/09/07
- 06/14: gnu: Add r-bionero., guix-commits, 2021/09/07
- 09/14: gnu: Add r-bioqc., guix-commits, 2021/09/07
- 14/14: gnu: Add r-biscuiteer., guix-commits, 2021/09/07
- 13/14: gnu: Add r-dmrseq., guix-commits, 2021/09/07