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branch master updated: gnu: r-cistopic: Update to 2.1.0.
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guix-commits |
Subject: |
branch master updated: gnu: r-cistopic: Update to 2.1.0. |
Date: |
Mon, 28 Jun 2021 13:27:49 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 4fb2b5c gnu: r-cistopic: Update to 2.1.0.
4fb2b5c is described below
commit 4fb2b5cef88d7d05d0d6db8ee51a5cd7a7dd862e
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Jun 28 19:23:24 2021 +0200
gnu: r-cistopic: Update to 2.1.0.
* gnu/packages/bioconductor.scm (r-cistopic): Update to 2.1.0.
---
gnu/packages/bioconductor.scm | 72 +++++++++++++++++++++----------------------
1 file changed, 35 insertions(+), 37 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e8d353f..284a0e7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10208,48 +10208,46 @@ analysis, evolutionary conservation, biogenesis to
functional analysis.")
(license license:gpl3)))
(define-public r-cistopic
- (let ((commit "29abd8df9afb60ff27ac3f0a590930debe926950")
- (revision "0"))
- (package
- (name "r-cistopic")
- (version (git-version "0.2.1" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/aertslab/cisTopic")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0s8irpsv5d2zcv4ihanvsf1vrpignzliscxnvs4519af3jmx78h8"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-aucell" ,r-aucell)
- ("r-data-table" ,r-data-table)
- ("r-dplyr" ,r-dplyr)
- ("r-dosnow" ,r-dosnow)
- ("r-dt" ,r-dt)
- ("r-feather" ,r-feather)
- ("r-fitdistrplus" ,r-fitdistrplus)
- ("r-genomicranges" ,r-genomicranges)
- ("r-ggplot2" ,r-ggplot2)
- ("r-lda" ,r-lda)
- ("r-matrix" ,r-matrix)
- ("r-plyr" ,r-plyr)
- ("r-rcistarget" ,r-rcistarget)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)))
- (home-page "https://github.com/aertslab/cisTopic")
- (synopsis "Modelling of cis-regulatory topics from single cell
epigenomics data")
- (description
- "The sparse nature of single cell epigenomics data can be overruled
using
+ (package
+ (name "r-cistopic")
+ (version "2.1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/aertslab/cisTopic")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0c4553rnxq7b1w451kcc3iwvak4qa5h2b43xmfw6ii8096zd1gbf"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-aucell" ,r-aucell)
+ ("r-data-table" ,r-data-table)
+ ("r-dplyr" ,r-dplyr)
+ ("r-dosnow" ,r-dosnow)
+ ("r-dt" ,r-dt)
+ ("r-feather" ,r-feather)
+ ("r-fitdistrplus" ,r-fitdistrplus)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-lda" ,r-lda)
+ ("r-matrix" ,r-matrix)
+ ("r-plyr" ,r-plyr)
+ ("r-rcistarget" ,r-rcistarget)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/aertslab/cisTopic")
+ (synopsis "Modelling of cis-regulatory topics from single cell epigenomics
data")
+ (description
+ "The sparse nature of single cell epigenomics data can be overruled using
probabilistic modelling methods such as @dfn{Latent Dirichlet
Allocation} (LDA). This package allows the probabilistic modelling of
cis-regulatory topics (cisTopics) from single cell epigenomics data, and
includes functionalities to identify cell states based on the contribution of
cisTopics and explore the nature and regulatory proteins driving them.")
- (license license:gpl3))))
+ (license license:gpl3)))
(define-public r-genie3
(package
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