[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
208/323: gnu: r-cytolib: Fix r-rhdf5libs linking.
From: |
guix-commits |
Subject: |
208/323: gnu: r-cytolib: Fix r-rhdf5libs linking. |
Date: |
Mon, 7 Dec 2020 15:13:49 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit e8a76318b79c2cd032b30ae0fb4025b820c2248a
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Dec 4 03:06:21 2020 +0100
gnu: r-cytolib: Fix r-rhdf5libs linking.
* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
---
gnu/packages/bioconductor.scm | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 840f937..ab2595b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6009,6 +6009,17 @@ cluster count and membership by stability evidence in
unsupervised analysis.")
"1wylzps7wbvm64k62w5bbi8l74gaqca96psfapxfg6mcac5yz4qw"))))
(properties `((upstream-name . "cytolib")))
(build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-linking
+ (lambda _
+ (substitute* "src/Makevars.in"
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\(RHDF5_LIBS\\)" match)
+ (string-append match "/libhdf5.a")))
+ #t)))))
(inputs
`(("zlib" ,zlib)))
(native-inputs
- 225/323: gnu: r-biocviews: Update to 1.58.0., (continued)
- 225/323: gnu: r-biocviews: Update to 1.58.0., guix-commits, 2020/12/07
- 230/323: gnu: r-limma: Update to 3.46.0., guix-commits, 2020/12/07
- 234/323: gnu: r-biomart: Update to 2.46.0., guix-commits, 2020/12/07
- 243/323: gnu: r-topgo: Update to 2.42.0., guix-commits, 2020/12/07
- 298/323: gnu: r-yapsa: Update to 1.16.0., guix-commits, 2020/12/07
- 302/323: gnu: r-delayedmatrixstats: Update to 1.12.0., guix-commits, 2020/12/07
- 317/323: gnu: r-watermelon: Update to 1.34.0., guix-commits, 2020/12/07
- 318/323: gnu: r-bigmelon: Update to 1.16.0., guix-commits, 2020/12/07
- 319/323: gnu: r-gqtlbase: Update to 1.21.1., guix-commits, 2020/12/07
- 321/323: gnu: r-delayedmatrixstats: Update to 1.12.1., guix-commits, 2020/12/07
- 208/323: gnu: r-cytolib: Fix r-rhdf5libs linking.,
guix-commits <=
- 215/323: gnu: r-deseq2: Update to 1.30.0., guix-commits, 2020/12/07
- 219/323: gnu: r-gseabase: Update to 1.52.0., guix-commits, 2020/12/07
- 220/323: gnu: r-category: Update to 2.56.0., guix-commits, 2020/12/07
- 222/323: gnu: r-shortread: Update to 1.48.0., guix-commits, 2020/12/07
- 223/323: gnu: r-systempiper: Update to 1.24.2., guix-commits, 2020/12/07
- 224/323: gnu: r-grohmm: Update to 1.24.0., guix-commits, 2020/12/07
- 232/323: gnu: r-biobase: Update to 2.50.0., guix-commits, 2020/12/07
- 245/323: gnu: r-impute: Update to 1.64.0., guix-commits, 2020/12/07
- 316/323: gnu: r-yarn: Update to 1.16.0., guix-commits, 2020/12/07
- 246/323: gnu: r-seqpattern: Update to 1.22.0., guix-commits, 2020/12/07