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branch master updated: gnu: methyldackel: Update to 0.5.1.
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guix-commits |
Subject: |
branch master updated: gnu: methyldackel: Update to 0.5.1. |
Date: |
Sun, 15 Nov 2020 17:31:10 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new e1fa3ea gnu: methyldackel: Update to 0.5.1.
e1fa3ea is described below
commit e1fa3ea9fe8d01dd124c5e304bde9243876378ba
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sun Nov 15 23:27:31 2020 +0100
gnu: methyldackel: Update to 0.5.1.
* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.5.1.
[arguments]: Link with libbigwig.
[inputs]: Add curl and libbigwig; replace htslib with htslib-1.9.
---
gnu/packages/bioinformatics.scm | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 15230a8..91fcb28 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15437,7 +15437,7 @@ patterns.")
(define-public methyldackel
(package
(name "methyldackel")
- (version "0.4.0")
+ (version "0.5.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -15446,7 +15446,7 @@ patterns.")
(file-name (git-file-name name version))
(sha256
(base32
- "10gh8k0ca92kywnrw5pkacq3g6r8s976s12k8jhp8g3g49q9a97g"))))
+ "1sfhf2ap75qxpnmy1ifgmxqs18rq8mah9mcgkby73vc6h0sw99ws"))))
(build-system gnu-build-system)
(arguments
`(#:test-target "test"
@@ -15459,11 +15459,14 @@ patterns.")
(replace 'configure
(lambda* (#:key outputs #:allow-other-keys)
(substitute* "Makefile"
+ (("-lhts ") "-lhts -lBigWig ")
(("install MethylDackel \\$\\(prefix\\)" match)
(string-append "install -d $(prefix); " match)))
#t)))))
(inputs
- `(("htslib" ,htslib)
+ `(("curl" ,curl) ; XXX: needed by libbigwig
+ ("htslib" ,htslib-1.9)
+ ("libbigwig" ,libbigwig)
("zlib" ,zlib)))
;; Needed for tests
(native-inputs
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