01/03: gnu: netcdf: Update to 4.7.4.

[guix-commits]

cbaines pushed a commit to branch master
in repository guix.

commit a9291a28b233dba20a523da679bb446643abf977
Author: Christopher Baines <mail@cbaines.net>
AuthorDate: Sun Oct 25 10:20:55 2020 +0000

    gnu: netcdf: Update to 4.7.4.
    
    This will fix an issue building qgis.
    
    * gnu/packages/maths.scm (netcdf): Update to 4.7.4.
    [source]: Remove the netcdf-tst_h_par.patch, also change the naming of the
    source tarball, as the name seems to have changed for recent releases.
    [inputs]: Update hdf5 and add curl.
    * gnu/packages/patches/netcdf-tst_h_par.patch: Delete.
    * gnu/local.mk (dist_patch_DATA): Remove deleted patch.
---
 gnu/local.mk                                |  1 -
 gnu/packages/maths.scm                      | 18 ++++++++----------
 gnu/packages/patches/netcdf-date-time.patch |  6 +++---
 gnu/packages/patches/netcdf-tst_h_par.patch | 21 ---------------------
 4 files changed, 11 insertions(+), 35 deletions(-)

diff --git a/gnu/local.mk b/gnu/local.mk
index 1a01360..0ada3b7 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1355,7 +1355,6 @@ dist_patch_DATA =                                         
\
   %D%/packages/patches/m4-gnulib-libio.patch                   \
   %D%/packages/patches/ncompress-fix-softlinks.patch           \
   %D%/packages/patches/netcdf-date-time.patch                  \
-  %D%/packages/patches/netcdf-tst_h_par.patch                  \
   %D%/packages/patches/netpbm-CVE-2017-2586.patch              \
   %D%/packages/patches/netpbm-CVE-2017-2587.patch              \
   %D%/packages/patches/netsurf-message-timestamp.patch         \
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index f7565dd..d263150 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1538,17 +1538,17 @@ similar to MATLAB, GNU Octave or SciPy.")
 (define-public netcdf
   (package
     (name "netcdf")
-    (version "4.4.1.1")
+    (version "4.7.4")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "ftp://ftp.unidata.ucar.edu/pub/netcdf/";
-                           "netcdf-" version ".tar.gz"))
+       (uri (string-append
+             "https://www.unidata.ucar.edu/downloads/netcdf/ftp/";
+             "netcdf-c-" version ".tar.gz"))
        (sha256
         (base32
-         "1blc7ik5yin7i0ls2kag0a9xjk12m0dzx6v1x88az3ras3scci2d"))
-       (patches (search-patches "netcdf-date-time.patch"
-                                "netcdf-tst_h_par.patch"))))
+         "1a2fpp15a2rl1m50gcvvzd9y6bavl6vjf9zzf63sz5gdmq06yiqf"))
+       (patches (search-patches "netcdf-date-time.patch"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("m4" ,m4)
@@ -1556,10 +1556,8 @@ similar to MATLAB, GNU Octave or SciPy.")
        ("graphviz" ,graphviz)))
     (inputs
      `(("hdf4" ,hdf4-alt)
-
-       ;; XXX: The 'tst_nccopy4.sh' test fails when using hdf5-1.10.
-       ("hdf5" ,hdf5-1.8)
-
+       ("hdf5" ,hdf5)
+       ("curl" ,curl)
        ("zlib" ,zlib)
        ("libjpeg" ,libjpeg-turbo)))
     (arguments
diff --git a/gnu/packages/patches/netcdf-date-time.patch 
b/gnu/packages/patches/netcdf-date-time.patch
index a4e7925..0bdfc55 100644
--- a/gnu/packages/patches/netcdf-date-time.patch
+++ b/gnu/packages/patches/netcdf-date-time.patch
@@ -3,9 +3,9 @@
 @@ -13,7 +13,7 @@
  #endif
  
- /* Tell the user the version of netCDF. */
+ /** @internal The version string for the library, used by
+  * nc_inq_libvers(). */
 -static const char nc_libvers[] = PACKAGE_VERSION " of "__DATE__" "__TIME__" 
$";
-+static const char nc_libvers[] = PACKAGE_VERSION" $";
++static const char nc_libvers[] = PACKAGE_VERSION " $";
  
  /**
- \defgroup lib_version Library Version
diff --git a/gnu/packages/patches/netcdf-tst_h_par.patch 
b/gnu/packages/patches/netcdf-tst_h_par.patch
deleted file mode 100644
index ac14a4c..0000000
--- a/gnu/packages/patches/netcdf-tst_h_par.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-From a83702834938b23cc2e843589aa223e2024a7e6f Mon Sep 17 00:00:00 2001
-From: Orion Poplawski <orion@cora.nwra.com>
-Date: Tue, 29 Nov 2016 11:48:01 -0700
-Subject: [PATCH] Add missing #include "err_macros.h" to tst_h_par.c
-
----
- h5_test/tst_h_par.c | 1 +
- 1 file changed, 1 insertion(+)
-
-diff --git a/h5_test/tst_h_par.c b/h5_test/tst_h_par.c
-index c3da7f4..a419d55 100644
---- a/h5_test/tst_h_par.c
-+++ b/h5_test/tst_h_par.c
-@@ -11,6 +11,7 @@
-    $Id: tst_h_par.c,v 1.15 2010/05/25 13:53:04 ed Exp $
- */
- #include <nc_tests.h>
-+#include "err_macros.h"
- #include <hdf5.h>
- 
- /* Defining USE_MPE causes the MPE trace library to be used (and you