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branch master updated: gnu: Add r-bisquerna.


From: guix-commits
Subject: branch master updated: gnu: Add r-bisquerna.
Date: Wed, 09 Sep 2020 11:03:14 -0400

This is an automated email from the git hooks/post-receive script.

roelj pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 0574446  gnu: Add r-bisquerna.
0574446 is described below

commit 0574446be82ef54b925441e4283bf754a86918a9
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed Sep 9 17:02:55 2020 +0200

    gnu: Add r-bisquerna.
    
    * gnu/packages/bioinformatics.scm (r-bisquerna): New variable.
---
 gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f8792ef..9f2fd86 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7923,6 +7923,31 @@ manipulating genomic intervals and variables defined 
along a genome.")
 on Bioconductor or which replace R functions.")
     (license license:artistic2.0)))
 
+(define-public r-bisquerna
+  (package
+   (name "r-bisquerna")
+   (version "1.0.4")
+   (source (origin
+            (method url-fetch)
+            (uri (cran-uri "BisqueRNA" version))
+            (sha256
+             (base32
+              "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
+   (properties `((upstream-name . "BisqueRNA")))
+   (build-system r-build-system)
+   (propagated-inputs
+    `(("r-biobase" ,r-biobase)
+      ("r-limsolve" ,r-limsolve)))
+   (home-page "https://www.biorxiv.org/content/10.1101/669911v1";)
+   (synopsis "Decomposition of Bulk Expression with Single-Cell Sequencing")
+   (description "This package provides tools to accurately estimate cell type
+abundances from heterogeneous bulk expression.  A reference-based method
+utilizes single-cell information to generate a signature matrix and
+transformation of bulk expression for accurate regression based estimates.
+A marker-based method utilizes known cell-specific marker genes to measure
+relative abundances across samples.")
+   (license license:gpl3)))
+
 (define-public r-annotationdbi
   (package
     (name "r-annotationdbi")



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