[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
03/09: gnu: smithwaterman: Build and install shared library and headers.
From: |
guix-commits |
Subject: |
03/09: gnu: smithwaterman: Build and install shared library and headers. |
Date: |
Thu, 27 Aug 2020 11:20:10 -0400 (EDT) |
efraim pushed a commit to branch master
in repository guix.
commit afa352223f103388ddbc2d7aae82949a561ec4e1
Author: Efraim Flashner <efraim@flashner.co.il>
AuthorDate: Thu Aug 27 18:05:20 2020 +0300
gnu: smithwaterman: Build and install shared library and headers.
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Add custom
phase to build PIE objects. Add custom 'build-dynamic phase to build
dynamic library. Adjust custom 'install phase to install shared library
and headers.
---
gnu/packages/bioinformatics.scm | 17 +++++++++++++++++
1 file changed, 17 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5377867..49122aa 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15454,12 +15454,29 @@ some of the details of opening and jumping in
tabix-indexed files.")
#:phases
(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
+ (add-after 'unpack 'patch-source
+ (lambda _
+ (substitute* "Makefile"
+ (("-c ") "-c -fPIC "))
+ #t))
+ (add-after 'build 'build-dynamic
+ (lambda _
+ (invoke "g++"
+ "-shared" "-o" "libsmithwaterman.so"
+ "smithwaterman.o" "SmithWatermanGotoh.o"
+ "disorder.o" "BandedSmithWaterman.o"
+ "LeftAlign.o" "Repeats.o" "IndelAllele.o")))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(lib (string-append out "/lib")))
(install-file "smithwaterman" bin)
+ (for-each
+ (lambda (file)
+ (install-file file (string-append out
"/include/smithwaterman")))
+ (find-files "." "\\.h$"))
+ (install-file "libsmithwaterman.so" lib)
(install-file "libsw.a" lib))
#t)))))
(home-page "https://github.com/ekg/smithwaterman")
- branch master updated (3dd3100 -> 9bb7534), guix-commits, 2020/08/27
- 04/09: gnu: smithwaterman: Install pkgconfig file., guix-commits, 2020/08/27
- 01/09: gnu: tabixpp: Build and install shared library and headers., guix-commits, 2020/08/27
- 03/09: gnu: smithwaterman: Build and install shared library and headers.,
guix-commits <=
- 06/09: gnu: fastahack: Install pkgconfig file., guix-commits, 2020/08/27
- 02/09: gnu: tabixpp: Install pkgconfig file., guix-commits, 2020/08/27
- 05/09: gnu: fastahack: Build and install shared library and headers., guix-commits, 2020/08/27
- 07/09: gnu: vcflib: Use shared libraries., guix-commits, 2020/08/27
- 08/09: gnu: vcflib: Install pkgconfig file., guix-commits, 2020/08/27
- 09/09: gnu: Add libflame., guix-commits, 2020/08/27