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09/80: gnu: r-seurat: Update to 3.2.0.
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From: |
guix-commits |
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Subject: |
09/80: gnu: r-seurat: Update to 3.2.0. |
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Date: |
Wed, 12 Aug 2020 07:57:57 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 8ca7141c02f8abdff3f361ec9eb533729f853e0c
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Aug 12 11:56:02 2020 +0200
gnu: r-seurat: Update to 3.2.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.2.0.
[propagated-inputs]: Remove r-tsne; add r-jsonlite, r-miniui, r-shiny,
r-spatstat, and r-tibble.
---
gnu/packages/bioinformatics.scm | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6733fcd..57bfcf8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9825,13 +9825,13 @@ and irregular enzymatic cleavages, mass measurement
accuracy, etc.")
(define-public r-seurat
(package
(name "r-seurat")
- (version "3.1.5")
+ (version "3.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "1lbq2pqhb6ih6iqawlnzdh05zff71pwbw1cpfv2sld3pd7kz0zkm"))))
+ "1vj3dlsqakgnn4x1jz9fkl2cy0jzc5s65h1c20fnamr7lk45pnf2"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
@@ -9848,11 +9848,13 @@ and irregular enzymatic cleavages, mass measurement
accuracy, etc.")
("r-ica" ,r-ica)
("r-igraph" ,r-igraph)
("r-irlba" ,r-irlba)
+ ("r-jsonlite" ,r-jsonlite)
("r-kernsmooth" ,r-kernsmooth)
("r-leiden" ,r-leiden)
("r-lmtest" ,r-lmtest)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
+ ("r-miniui" ,r-miniui)
("r-patchwork" ,r-patchwork)
("r-pbapply" ,r-pbapply)
("r-plotly" ,r-plotly)
@@ -9870,7 +9872,9 @@ and irregular enzymatic cleavages, mass measurement
accuracy, etc.")
("r-rtsne" ,r-rtsne)
("r-scales" ,r-scales)
("r-sctransform" ,r-sctransform)
- ("r-tsne" ,r-tsne)
+ ("r-shiny" ,r-shiny)
+ ("r-spatstat" ,r-spatstat)
+ ("r-tibble" ,r-tibble)
("r-uwot" ,r-uwot)))
(home-page "http://www.satijalab.org/seurat";)
(synopsis "Seurat is an R toolkit for single cell genomics")
- branch master updated (31b1455 -> 1c831f4), guix-commits, 2020/08/12
- 03/80: gnu: Add r-spatstat-utils., guix-commits, 2020/08/12
- 04/80: gnu: Add r-spatstat-data., guix-commits, 2020/08/12
- 05/80: gnu: Add r-spatstat., guix-commits, 2020/08/12
- 01/80: gnu: Add r-goftest., guix-commits, 2020/08/12
- 06/80: gnu: Add r-gaston., guix-commits, 2020/08/12
- 07/80: gnu: Add r-cpp11., guix-commits, 2020/08/12
- 08/80: gnu: r-nmf: Update to 0.23.0., guix-commits, 2020/08/12
- 10/80: gnu: r-sys: Update to 3.4., guix-commits, 2020/08/12
- 02/80: gnu: Add r-tensor., guix-commits, 2020/08/12
- 09/80: gnu: r-seurat: Update to 3.2.0.,
guix-commits <=
- 12/80: gnu: r-servr: Update to 0.18., guix-commits, 2020/08/12
- 15/80: gnu: r-pkgbuild: Update to 1.1.0., guix-commits, 2020/08/12
- 18/80: gnu: r-psych: Update to 2.0.7., guix-commits, 2020/08/12
- 13/80: gnu: r-pls: Update to 2.7-3., guix-commits, 2020/08/12
- 17/80: gnu: r-distillery: Update to 1.1., guix-commits, 2020/08/12
- 19/80: gnu: r-stringdist: Update to 0.9.6., guix-commits, 2020/08/12
- 23/80: gnu: r-tinytex: Update to 0.25., guix-commits, 2020/08/12
- 11/80: gnu: r-rvest: Update to 0.3.6., guix-commits, 2020/08/12
- 14/80: gnu: r-ps: Update to 1.3.4., guix-commits, 2020/08/12
- 20/80: gnu: r-mice: Update to 3.11.0., guix-commits, 2020/08/12