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branch master updated: gnu: Add r-m3c.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-m3c. |
Date: |
Tue, 11 Aug 2020 05:27:50 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 0b8c7e4 gnu: Add r-m3c.
0b8c7e4 is described below
commit 0b8c7e4bb5c6ca894d022bbd1a530be162f2bbfd
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Aug 11 11:26:44 2020 +0200
gnu: Add r-m3c.
* gnu/packages/bioconductor.scm (r-m3c): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b191c8b..8f5a4df 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8116,3 +8116,36 @@ dimensional mass cytometry data.")
Tool) analysis automatic by constructing a HTTP POST request according to
user's input and automatically retrieving results from GREAT web server.")
(license license:expat)))
+
+(define-public r-m3c
+ (package
+ (name "r-m3c")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "M3C" version))
+ (sha256
+ (base32
+ "0zq8lm4280p8h65i7myscwa4srs5ajh944xv6zni2f5sjyp7ij2y"))))
+ (properties `((upstream-name . "M3C")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cluster" ,r-cluster)
+ ("r-corpcor" ,r-corpcor)
+ ("r-doparallel" ,r-doparallel)
+ ("r-dosnow" ,r-dosnow)
+ ("r-foreach" ,r-foreach)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-matrix" ,r-matrix)
+ ("r-matrixcalc" ,r-matrixcalc)
+ ("r-rtsne" ,r-rtsne)
+ ("r-umap" ,r-umap)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/M3C")
+ (synopsis "Monte Carlo reference-based consensus clustering")
+ (description
+ "M3C is a consensus clustering algorithm that uses a Monte Carlo
+simulation to eliminate overestimation of @code{K} and can reject the null
+hypothesis @code{K=1}.")
+ (license license:agpl3+)))
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