265/265: gnu: r-destiny: Update to 3.0.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 6e10ac0780203e5efd0469ed9d8be4f76cfb8303
Author: Ricardo Wurmus <address@hidden>
Date:   Sun Dec 15 15:37:46 2019 +0100

    gnu: r-destiny: Update to 3.0.0.
    
    * gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
    [propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
    r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
    r-tidyselect; remove r-igraph.
---
 gnu/packages/bioconductor.scm | 14 +++++++++++---
 1 file changed, 11 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9714e84..cb748df 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2102,29 +2102,37 @@ possible, parallelization is achieved using the 
BiocParallel framework.")
 (define-public r-destiny
   (package
     (name "r-destiny")
-    (version "2.14.0")
+    (version "3.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "destiny" version))
        (sha256
         (base32
-         "1bpa114fgrknn6415g4d1jrvb924nkwi18jzfqribpvcf1vlgrf3"))))
+         "0vj9nk8g6i4vzm6cnzvbsqcvyk6fhmx0a0nxxrciarffyhqk81yz"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-biobase" ,r-biobase)
        ("r-biocgenerics" ,r-biocgenerics)
+       ("r-ggplot-multistats" ,r-ggplot-multistats)
        ("r-ggplot2" ,r-ggplot2)
        ("r-ggthemes" ,r-ggthemes)
-       ("r-igraph" ,r-igraph)
+       ("r-irlba" ,r-irlba)
+       ("r-knn-covertree" ,r-knn-covertree)
        ("r-matrix" ,r-matrix)
+       ("r-pcamethods" ,r-pcamethods)
        ("r-proxy" ,r-proxy)
        ("r-rcpp" ,r-rcpp)
        ("r-rcppeigen" ,r-rcppeigen)
+       ("r-rcpphnsw" ,r-rcpphnsw)
+       ("r-rspectra" ,r-rspectra)
        ("r-scales" ,r-scales)
        ("r-scatterplot3d" ,r-scatterplot3d)
+       ("r-singlecellexperiment" ,r-singlecellexperiment)
        ("r-smoother" ,r-smoother)
        ("r-summarizedexperiment" ,r-summarizedexperiment)
+       ("r-tidyr" ,r-tidyr)
+       ("r-tidyselect" ,r-tidyselect)
        ("r-vim" ,r-vim)))
     (home-page "https://bioconductor.org/packages/destiny/";)
     (synopsis "Create and plot diffusion maps")