branch master updated (58c3a4f -> 6e10ac0)

[guix-commits]

rekado pushed a change to branch master
in repository guix.

      from  58c3a4f   gnu: java-svg-salamander: Return #t from snippet.
       new  b5b6e74   gnu: Add r-idpmisc.
       new  f431d5e   guix: Upgrade to Bioconductor 3.10.
       new  eb15df8   gnu: Add r-qqman.
       new  e5d722f   gnu: Add r-biocversion.
       new  b4a22cc   gnu: Add r-multidataset.
       new  b4aee31   gnu: Add r-cytolib.
       new  15ac0c1   gnu: Add r-ncdfflow.
       new  f5f4403   gnu: Add r-ggcyto.
       new  5aa7e88   gnu: Add r-ggplot-multistats.
       new  257b3b8   gnu: Add r-knn-covertree.
       new  9d1099e   gnu: r-preprocesscore: Update to 1.48.0.
       new  dbfce8f   gnu: r-rgraphviz: Update to 2.30.0.
       new  0dd4b7d   gnu: Add r-flowviz.
       new  c8ab9eb   gnu: Add r-flowclust.
       new  f196451   gnu: Add r-rprotobuflib.
       new  82c1111   gnu: Add r-flowworkspace.
       new  b700b9e   gnu: Add r-flowstats.
       new  6aedc80   gnu: Add r-opencyto.
       new  7a62d5e   gnu: Add r-cytoml.
       new  2c8433c   gnu: r-depecher: Update to 1.2.0.
       new  be5e4e9   gnu: r-biocgenerics: Update to 0.32.0.
       new  5d87f12   gnu: r-affycomp: Update to 1.62.0.
       new  c2fa63e   gnu: r-affycompatible: Update to 1.46.0.
       new  f561421   gnu: r-affycontam: Update to 1.44.0.
       new  1693534   gnu: r-affycoretools: Update to 1.58.2.
       new  ce5162d   gnu: r-affxparser: Update to 1.58.0.
       new  7a11192   gnu: r-annotate: Update to 1.64.0.
       new  ddd3673   gnu: r-hpar: Update to 1.28.0.
       new  2e73ea9   gnu: r-regioner: Update to 1.18.0.
       new  7ccbaf1   gnu: r-reportingtools: Update to 2.26.0.
       new  7778e91   gnu: r-geneplotter: Update to 1.64.0.
       new  79820b9   gnu: r-oligoclasses: Update to 1.48.0.
       new  084c651   gnu: r-oligo: Update to 1.50.0.
       new  bcf711b   gnu: r-qvalue: Update to 2.18.0.
       new  73883f0   gnu: r-diffbind: Update to 2.14.0.
       new  ba74434   gnu: r-ripseeker: Update to 1.26.0.
       new  16d49c2   gnu: r-multtest: Update to 2.42.0.
       new  70eb483   gnu: r-graph: Update to 1.64.0.
       new  cf8968d   gnu: r-chippeakanno: Update to 3.20.0.
       new  b6c2f09   gnu: r-marray: Update to 1.64.0.
       new  8341f70   gnu: r-cghbase: Update to 1.46.0.
       new  8f2a4ea   gnu: r-cghcall: Update to 2.48.0.
       new  23ce5ad   gnu: r-qdnaseq: Update to 1.22.0.
       new  d772282   gnu: r-bayseq: Update to 2.20.0.
       new  b0897fb   gnu: r-chipcomp: Update to 1.16.0.
       new  88af704   gnu: r-riboprofiling: Update to 1.16.0.
       new  595b6c9   gnu: r-riboseqr: Update to 1.20.0.
       new  bb84174   gnu: r-interactionset: Update to 1.14.0.
       new  b701ed6   gnu: r-genomicinteractions: Update to 1.20.0.
       new  b2b5b03   gnu: r-ctc: Update to 1.60.0.
       new  ab7f3cb   gnu: r-goseq: Update to 1.38.0.
       new  728571f   gnu: r-glimma: Update to 1.14.0.
       new  9c07114   gnu: r-rots: Update to 1.14.0.
       new  565bb84   gnu: r-plgem: Update to 1.58.0.
       new  74bb4cd   gnu: r-inspect: Update to 1.16.0.
       new  2d86dc2   gnu: r-dnabarcodes: Update to 1.16.0.
       new  efd0934   gnu: r-ruvseq: Update to 1.20.0.
       new  12e2aa9   gnu: r-biocneighbors: Update to 1.4.1.
       new  c88448d   gnu: r-biocsingular: Update to 1.2.0.
       new  2e17cbd   gnu: r-savr: Update to 1.24.0.
       new  84825e5   gnu: r-chipexoqual: Update to 1.10.0.
       new  eb3fd38   gnu: r-copynumber: Update to 1.26.0.
       new  bba70cd   gnu: r-dnacopy: Update to 1.60.0.
       new  96030bf   gnu: r-deds: Update to 1.60.0.
       new  a9649c4   gnu: r-ebseq: Update to 1.26.0.
       new  153dc51   gnu: r-lpsymphony: Update to 1.14.0.
       new  0383bd0   gnu: r-ihw: Update to 1.14.0.
       new  a5cc1f1   gnu: r-icobra: Update to 1.14.0.
       new  dc5237f   gnu: r-mast: Update to 1.12.0.
       new  9732e69   gnu: r-monocle: Update to 2.14.0.
       new  81a125c   gnu: r-noiseq: Update to 2.30.0.
       new  2f223b2   gnu: r-scdd: Update to 1.10.0.
       new  048a43d   gnu: r-scone: Update to 1.10.0.
       new  db85744   gnu: r-geoquery: Update to 2.54.1.
       new  418d721   gnu: r-illuminaio: Update to 0.28.0.
       new  3381dc4   gnu: r-mzr: Update to 2.20.0.
       new  d12328f   gnu: r-protgenerics: Update to 1.18.0.
       new  2a6ce98   gnu: r-sva: Update to 3.34.0.
       new  065c305   gnu: r-methylkit: Update to 1.12.0.
       new  51ca216   gnu: r-affyio: Update to 1.56.0.
       new  32f6059   gnu: r-affy: Update to 1.64.0.
       new  746e1f0   gnu: r-copywriter: Update to 2.18.0.
       new  43058ca   gnu: r-chipseq: Update to 1.36.0.
       new  af87ac3   gnu: r-annotationfilter: Update to 1.10.0.
       new  dc9d483   gnu: r-vsn: Update to 3.54.0.
       new  758dfc6   gnu: r-mzid: Update to 1.24.0.
       new  c81ccd3   gnu: r-delayedmatrixstats: Update to 1.8.0.
       new  964634f   gnu: r-scran: Update to 1.14.5.
       new  bf23416   gnu: r-scater: Update to 1.14.5.
       new  376f2f3   gnu: r-singlecellexperiment: Update to 1.8.0.
       new  8804e4b   gnu: r-beachmat: Update to 2.2.1.
       new  1f5d262   gnu: r-rhdf5lib: Update to 1.8.0.
       new  7557bd0   gnu: r-hdf5array: Update to 1.14.1.
       new  8db2915   gnu: r-fithic: Update to 1.12.0.
       new  0a16021   gnu: r-hitc: Update to 1.30.0.
       new  2832999   gnu: r-gwascat: Update to 2.18.0.
       new  2e13f10   gnu: r-sushi: Update to 1.24.0.
       new  d57b6b4   gnu: r-gviz: Update to 1.30.0.
       new  cfa93a3   gnu: r-gqtlstats: Update to 1.18.0.
       new  6fff104   gnu: r-ldblock: Update to 1.16.0.
       new  14eb097   gnu: r-snpstats: Update to 1.36.0.
       new  67d4fd5   gnu: r-erma: Update to 1.2.0.
       new  89a4169   gnu: r-gqtlbase: Update to 1.18.0.
       new  81600df   gnu: r-ggbio: Update to 1.34.0.
       new  866810e   gnu: r-biovizbase: Update to 1.34.1.
       new  e890326   gnu: r-organismdbi: Update to 1.28.0.
       new  e107f3d   gnu: r-ensembldb: Update to 2.10.2.
       new  2edb116   gnu: r-dirichletmultinomial: Update to 1.28.0.
       new  dac706c   gnu: r-complexheatmap: Update to 2.2.0.
       new  48c7ee9   gnu: r-genomicfiles: Update to 1.22.0.
       new  b342b20   gnu: r-gage: Update to 2.36.0.
       new  fedba48   gnu: r-keggrest: Update to 1.26.1.
       new  c21bf90   gnu: r-fastseg: Update to 1.32.0.
       new  6339ea2   gnu: r-annotationhub: Update to 2.18.0.
       new  2beffcb   gnu: r-interactivedisplaybase: Update to 1.24.0.
       new  0a6704e   gnu: r-edaseq: Update to 2.20.0.
       new  783bbe3   gnu: r-deseq: Update to 1.38.0.
       new  3ccf1e3   gnu: r-aroma-light: Update to 3.16.0.
       new  597aeb8   gnu: r-msnid: Update to 1.20.0.
       new  5899399   gnu: r-msnbase: Update to 2.12.0.
       new  4e5c217   gnu: r-pcamethods: Update to 1.78.0.
       new  126539d   gnu: r-rhdf5: Update to 2.30.1.
       new  3a0229e   gnu: r-tximport: Update to 1.14.0.
       new  3964f2c   gnu: r-mutationalpatterns: Update to 1.12.0.
       new  f375d74   gnu: r-rcas: Update to 1.12.0.
       new  7b6c008   gnu: r-bamsignals: Update to 1.18.0.
       new  108c03a   gnu: r-rhtslib: Update to 1.18.0.
       new  2f15045   gnu: r-zlibbioc: Update to 1.32.0.
       new  a5f9b30   gnu: r-motifrg: Update to 1.30.0.
       new  a979019   gnu: r-seqlogo: Update to 1.52.0.
       new  e06b34e   gnu: r-genomation: Update to 1.18.0.
       new  b590742   gnu: r-seqpattern: Update to 1.18.0.
       new  bca1c45   gnu: r-impute: Update to 1.60.0.
       new  e3a2b96   gnu: r-bsgenome: Update to 1.54.0.
       new  323f42b   gnu: r-topgo: Update to 2.37.0.
       new  9fec340   gnu: r-genomicfeatures: Update to 1.38.0.
       new  15187da   gnu: r-rtracklayer: Update to 1.46.0.
       new  55e515d   gnu: r-genomicalignments: Update to 1.22.1.
       new  264db03   gnu: r-summarizedexperiment: Update to 1.16.0.
       new  4ada4fb   gnu: r-delayedarray: Update to 0.12.0.
       new  e1d681e   gnu: r-rsamtools: Update to 2.2.1.
       new  15cd3f6   gnu: r-biostrings: Update to 2.54.0.
       new  5854a4a   gnu: r-biocparallel: Update to 1.20.0.
       new  68a9d9f   gnu: r-biomart: Update to 2.42.0.
       new  de9ae3e   gnu: r-annotationdbi: Update to 1.48.0.
       new  8d1c366   gnu: r-biobase: Update to 2.46.0.
       new  0202b13   gnu: r-genomicranges: Update to 1.38.0.
       new  da6edb1   gnu: r-xvector: Update to 0.26.0.
       new  eea491e   gnu: r-limma: Update to 3.42.0.
       new  8f5d2c3   gnu: r-variantannotation: Update to 1.32.0.
       new  da03fa3   gnu: r-edger: Update to 3.28.0.
       new  937f3a4   gnu: r-genomeinfodb: Update to 1.22.0.
       new  d272348   gnu: r-iranges: Update to 2.20.1.
       new  d37daf8   gnu: r-s4vectors: Update to 0.24.1.
       new  7758d52   gnu: r-bioccheck: Update to 1.22.0.
       new  ef96154   gnu: r-biocstyle: Update to 2.14.2.
       new  74d59b6   gnu: r-biocviews: Update to 1.54.0.
       new  f8f8156   gnu: r-grohmm: Update to 1.20.0.
       new  58fd68b   gnu: r-systempiper: Update to 1.20.0.
       new  f29c9f0   gnu: r-shortread: Update to 1.44.0.
       new  5457308   gnu: r-gostats: Update to 2.52.0.
       new  4afcf94   gnu: r-category: Update to 2.52.1.
       new  d266184   gnu: r-gseabase: Update to 1.48.0.
       new  33a2acb   gnu: r-rbgl: Update to 1.62.1.
       new  12c4555   gnu: r-annotationforge: Update to 1.28.0.
       new  ebc81e3   gnu: r-dexseq: Update to 1.32.0.
       new  867018e   gnu: r-deseq2: Update to 1.26.0.
       new  0726645   gnu: r-genefilter: Update to 1.68.0.
       new  989be6d   gnu: r-unifiedwmwqpcr: Update to 1.22.0.
       new  0b0906c   gnu: r-htqpcr: Update to 1.40.0.
       new  e2f481d   gnu: r-variancepartition: Update to 1.16.0.
       new  e13f977   gnu: r-wavetiling: Update to 1.28.0.
       new  053a212   gnu: r-genomegraphs: Update to 1.46.0.
       new  6f5415d   gnu: r-variantfiltering: Update to 1.22.0.
       new  cb734c6   gnu: r-timeseriesexperiment: Update to 1.4.0.
       new  c0cba4b   gnu: r-wavcluster: Update to 2.20.0.
       new  02c18ab   gnu: r-reqon: Update to 1.32.0.
       new  2223bbc   gnu: r-seqbias: Update to 1.34.0.
       new  8b941a5   gnu: r-bigmelon: Update to 1.12.0.
       new  f5ef7dd   gnu: r-gdsfmt: Update to 1.22.0.
       new  9eade22   gnu: r-watermelon: Update to 1.30.0.
       new  3672b74   gnu: r-roc: Update to 1.62.0.
       new  33ce50e   gnu: r-genie3: Update to 1.8.0.
       new  42b0629   gnu: r-cicero: Update to 1.4.0.
       new  51ffac4   gnu: r-rcistarget: Update to 1.6.0.
       new  4930a89   gnu: r-mixomics: Update to 6.10.6.
       new  ba71567   gnu: r-flowsom: Update to 1.18.0.
       new  8042087   gnu: r-flowmeans: Update to 1.46.0.
       new  b2a2f32   gnu: r-flowcore: Update to 1.52.1.
       new  8ad6b23   gnu: r-consensusclusterplus: Update to 1.50.0.
       new  482ba0b   gnu: r-flowutils: Update to 1.50.0.
       new  4390788   gnu: r-rsubread: Update to 2.0.0.
       new  7000725   gnu: r-annotatr: Update to 1.12.1.
       new  7d29dc9   gnu: r-biosigner: Update to 1.14.0.
       new  643aaf7   gnu: r-ropls: Update to 1.18.0.
       new  8d76627   gnu: r-birta: Update to 1.30.0.
       new  a9e5145   gnu: r-birewire: Update to 3.18.0.
       new  11db82b   gnu: r-rqc: Update to 1.20.0.
       new  a15e52e   gnu: r-quasr: Update to 1.26.0.
       new  3dd2450   gnu: r-rhisat2: Update to 1.2.0.
       new  2cebc5d   gnu: r-sgseq: Update to 1.20.0.
       new  02684be   gnu: r-rbowtie: Update to 1.26.0.
       new  049de95   gnu: r-iclusterplus: Update to 1.22.0.
       new  97e3170   gnu: r-biocfilecache: Update to 1.10.2.
       new  4f0d858   gnu: r-arrmnormalization: Update to 1.26.0.
       new  82d87ce   gnu: r-progeny: Update to 1.8.0.
       new  c5a4c5a   gnu: r-rbowtie2: Update to 1.8.0.
       new  18b93e0   gnu: r-zfpkm: Update to 1.8.0.
       new  316bcd0   gnu: r-webbioc: Update to 1.58.0.
       new  1a2569e   gnu: r-widgettools: Update to 1.64.0.
       new  25db561   gnu: r-wiggleplotr: Update to 1.10.1.
       new  92f4053   gnu: r-wrench: Update to 1.4.0.
       new  4fb5234   gnu: r-xcms: Update to 3.8.1.
       new  a07ee25   gnu: r-massspecwavelet: Update to 1.52.0.
       new  1f0101a   gnu: r-xbseq: Update to 1.18.0.
       new  f0dd0fe   gnu: r-roar: Update to 1.22.0.
       new  94fdea1   gnu: r-yarn: Update to 1.12.0.
       new  eb697ff   gnu: r-quantro: Update to 1.20.0.
       new  87942b7   gnu: r-yaqcaffy: Update to 1.46.0.
       new  a87aa2f   gnu: r-simpleaffy: Update to 2.62.0.
       new  2f90bab   gnu: r-gcrma: Update to 2.58.0.
       new  580e434   gnu: r-yapsa: Update to 1.12.0.
       new  4f8e048   gnu: r-somaticsignatures: Update to 2.22.0.
       new  cf0a1cb   gnu: r-gtrellis: Update to 1.18.0.
       new  3796e24   gnu: r-yamss: Update to 1.12.0.
       new  ca7192a   gnu: r-ebimage: Update to 4.28.1.
       new  3a35d27   gnu: r-aucell: Update to 1.8.0.
       new  50e6f76   gnu: r-allelicimbalance: Update to 1.24.0.
       new  eda4908   gnu: r-annotationtools: Update to 1.60.0.
       new  3a731c8   gnu: r-annotationfuncs: Update to 1.36.0.
       new  307667c   gnu: r-abaenrichment: Update to 1.16.0.
       new  4997e02   gnu: r-gofuncr: Update to 1.6.0.
       new  36aecb2   gnu: r-atacseqqc: Update to 1.10.1.
       new  e89f16e   gnu: r-genomicscores: Update to 1.10.0.
       new  dda936c   gnu: r-motifstack: Update to 1.30.0.
       new  35a1b3e   gnu: r-motiv: Update to 1.42.0.
       new  6dfe505   gnu: r-rgadem: Update to 2.34.0.
       new  32b471f   gnu: r-bacon: Update to 1.14.0.
       new  aef4b34   gnu: r-abseqr: Update to 1.4.0.
       new  344eb4c   gnu: r-a4: Update to 1.34.0.
       new  85c945a   gnu: r-a4base: Update to 1.34.0.
       new  977a780   gnu: r-a4reporting: Update to 1.34.0.
       new  d6859c7   gnu: r-a4preproc: Update to 1.34.0.
       new  102b982   gnu: r-a4classif: Update to 1.34.0.
       new  4ed18dd   gnu: r-a4core: Update to 1.34.0.
       new  fc4a9dd   gnu: r-annaffy: Update to 1.58.0.
       new  6374984   gnu: r-mlinterfaces: Update to 1.66.0.
       new  08c01b7   gnu: r-clusterprofiler: Update to 3.14.0.
       new  0654a9b   gnu: r-enrichplot: Update to 1.6.0.
       new  166b3c2   gnu: r-dose: Update to 3.12.0.
       new  b4e1268   gnu: r-fgsea: Update to 1.12.0.
       new  869965d   gnu: r-sigpathway: Update to 1.54.0.
       new  5ed7675   gnu: r-anota: Update to 1.34.0.
       new  c245ec3   gnu: r-gosemsim: Update to 2.12.0.
       new  9f21862   gnu: r-heatplus: Update to 2.32.0.
       new  9b72bbf   gnu: r-varianttools: Update to 1.28.0.
       new  a18f325   gnu: r-triform: Update to 1.28.0.
       new  1b890c3   gnu: r-ioniser: Update to 2.10.0.
       new  a2877d6   gnu: r-linnorm: Update to 2.10.0.
       new  8f7bc87   gnu: r-lumi: Update to 2.38.0.
       new  b57cffb   gnu: r-methylumi: Update to 2.32.0.
       new  dfd4287   gnu: r-minfi: Update to 1.32.0.
       new  4efdac5   gnu: r-bumphunter: Update to 1.28.0.
       new  b4ee414   gnu: r-siggenes: Update to 1.60.0.
       new  6e10ac0   gnu: r-destiny: Update to 3.0.0.

The 265 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm   | 1096 +++++++++++++++++++++++++++------------
 gnu/packages/bioinformatics.scm |  412 ++++++++-------
 gnu/packages/cran.scm           |  105 ++++
 gnu/packages/graph.scm          |    4 +-
 gnu/packages/statistics.scm     |    4 +-
 guix/build-system/r.scm         |    2 +-
 guix/import/cran.scm            |    4 +-
 7 files changed, 1088 insertions(+), 539 deletions(-)