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108/215: gnu: r-systempiper: Update to 1.18.0.
From: |
guix-commits |
Subject: |
108/215: gnu: r-systempiper: Update to 1.18.0. |
Date: |
Sun, 5 May 2019 18:15:50 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 3addf736d5b140c8c4b2303e63cd6375dd8b9720
Author: Ricardo Wurmus <address@hidden>
Date: Sun May 5 23:51:59 2019 +0200
gnu: r-systempiper: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
---
gnu/packages/bioinformatics.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f6564e7..c38481d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6944,19 +6944,19 @@ ungapped alignment formats.")
(define-public r-systempiper
(package
(name "r-systempiper")
- (version "1.16.1")
+ (version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "systemPipeR" version))
(sha256
(base32
- "0qzydz87rld2nhwzbfgrw5jfgh8maa9y54mjx9c4285m11qj2shq"))))
+ "1063vdf4g2i5xyabwvzkqfxd2j8s4zs6z4zxf8lx2ccjddhkn37a"))))
(properties `((upstream-name . "systemPipeR")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotate" ,r-annotate)
- ("r-batchjobs" ,r-batchjobs)
+ ("r-batchtools" ,r-batchtools)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-deseq2" ,r-deseq2)
@@ -6972,6 +6972,7 @@ ungapped alignment formats.")
("r-rsamtools" ,r-rsamtools)
("r-shortread" ,r-shortread)
("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-yaml" ,r-yaml)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://github.com/tgirke/systemPipeR")
(synopsis "Next generation sequencing workflow and reporting environment")
- 93/215: gnu: r-ggbio: Update to 1.32.0., (continued)
- 93/215: gnu: r-ggbio: Update to 1.32.0., guix-commits, 2019/05/05
- 89/215: gnu: r-ldblock: Update to 1.14.0., guix-commits, 2019/05/05
- 101/215: gnu: r-keggrest: Update to 1.24.0., guix-commits, 2019/05/05
- 103/215: gnu: r-annotationhub: Update to 2.16.0., guix-commits, 2019/05/05
- 87/215: gnu: r-gviz: Update to 1.28.0., guix-commits, 2019/05/05
- 84/215: gnu: r-fithic: Update to 1.10.0., guix-commits, 2019/05/05
- 91/215: gnu: r-snpstats: Update to 1.34.0., guix-commits, 2019/05/05
- 95/215: gnu: r-organismdbi: Update to 1.26.0., guix-commits, 2019/05/05
- 112/215: gnu: r-regioner: Update to 1.16.0., guix-commits, 2019/05/05
- 105/215: gnu: r-rcas: Update to 1.10.0., guix-commits, 2019/05/05
- 108/215: gnu: r-systempiper: Update to 1.18.0.,
guix-commits <=
- 120/215: gnu: r-cghbase: Update to 1.44.0., guix-commits, 2019/05/05
- 111/215: gnu: r-hpar: Update to 1.26.0., guix-commits, 2019/05/05
- 123/215: gnu: r-bayseq: Update to 2.18.0., guix-commits, 2019/05/05
- 117/215: gnu: r-multtest: Update to 2.40.0., guix-commits, 2019/05/05
- 121/215: gnu: r-cghcall: Update to 2.46.0., guix-commits, 2019/05/05
- 96/215: gnu: r-ensembldb: Update to 2.8.0., guix-commits, 2019/05/05
- 92/215: gnu: r-gqtlbase: Update to 1.16.0., guix-commits, 2019/05/05
- 114/215: gnu: r-qvalue: Update to 2.16.0., guix-commits, 2019/05/05
- 109/215: gnu: r-biocgenerics: Update to 0.30.0., guix-commits, 2019/05/05
- 119/215: gnu: r-marray: Update to 1.62.0., guix-commits, 2019/05/05