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06/14: gnu: Add r-simpleaffy.
From: |
guix-commits |
Subject: |
06/14: gnu: Add r-simpleaffy. |
Date: |
Sat, 30 Mar 2019 03:55:55 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 4675b3cfa3dbf13056dec550d5a72fbf4a73def7
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 29 22:19:30 2019 +0100
gnu: Add r-simpleaffy.
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 91a5a66..ade5115 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3798,3 +3798,31 @@ affinity is estimated in an NSB experiment in which only
NSB but no
gene-specific bidning is expected.")
;; Any version of the LGPL
(license license:lgpl2.1+)))
+
+(define-public r-simpleaffy
+ (package
+ (name "r-simpleaffy")
+ (version "2.58.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "simpleaffy" version))
+ (sha256
+ (base32
+ "0bry0d2vw0w2rrpnmfm1kl5v4rdclypmy33jvs9l43vd6vx2ra9s"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affy" ,r-affy)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-gcrma" ,r-gcrma)
+ ("r-genefilter" ,r-genefilter)))
+ (home-page "https://bioconductor.org/packages/simpleaffy/")
+ (synopsis "Very simple high level analysis of Affymetrix data")
+ (description
+ "This package provides high level functions for reading Affy @file{.CEL}
+files, phenotypic data, and then computing simple things with it, such as
+t-tests, fold changes and the like. It makes heavy use of the @code{affy}
+library. It also has some basic scatter plot functions and mechanisms for
+generating high resolution journal figures.")
+ (license license:gpl2+)))
- branch master updated (bc91562 -> ec12e53), guix-commits, 2019/03/30
- 04/14: gnu: Add r-yapsa., guix-commits, 2019/03/30
- 03/14: gnu: Add r-somaticsignatures., guix-commits, 2019/03/30
- 05/14: gnu: Add r-gcrma., guix-commits, 2019/03/30
- 02/14: gnu: Add r-gtrellis., guix-commits, 2019/03/30
- 08/14: gnu: Add r-downloader., guix-commits, 2019/03/30
- 11/14: gnu: Add r-roar., guix-commits, 2019/03/30
- 07/14: gnu: Add r-yaqcaffy., guix-commits, 2019/03/30
- 01/14: gnu: Add r-pmcmr., guix-commits, 2019/03/30
- 10/14: gnu: Add r-yarn., guix-commits, 2019/03/30
- 06/14: gnu: Add r-simpleaffy.,
guix-commits <=
- 09/14: gnu: Add r-quantro., guix-commits, 2019/03/30
- 12/14: gnu: Add r-xbseq., guix-commits, 2019/03/30
- 13/14: gnu: Add r-massspecwavelet., guix-commits, 2019/03/30
- 14/14: gnu: Add r-xcms., guix-commits, 2019/03/30